Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02480 ATGGGGGATATTAGAAAATGGTTCATGAAAGCACACGACAAAGATAACGGCAGTGGGTCAAAGAAAGCAAAACCTGCTCCAAGCAGCTTAGAGAAATCCGCTTCAGCTGGAAAAACAGGACCGAGTGGTGGAGAAAGTGCTGGCAGACAGATAACTAGCAAATATTTTGCATCAGAAAAGCAGGAGGCCAAGGATGCAGAAGAAACAGAGGTACTCCCGATCATACGGAAGTCCCCACGGGATACTAAGGAATCACCAGCCAAAAGAAAGTTTCAAAAGTATAACGAGGAATCACCGAAAGCTTCACCTTTAAAAAAATCAAACAAAGTTGATGACAATGATGATGATGCTGTTCTTTCTAGTTCTAAAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTGTTGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTAAAGCCCAGTGGAAGGGGTAGGGGTGGAAAAGGTTCGTCTGCTGCAACCATTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGGGAAAAGGAAGTCCCTGAAGGTGCTCCGGACTGTTTAGCTGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTCTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATCGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTGTTTGACATGATCCGTGCATCTGGCAAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAATCTGAGGAATCTCCGACAAAGAAAAATTTCCAGAAAGTGCAAGCAAAATCCCACAAAGATTTGGCTGCTGGTGCTTCACCTGCTAAGCAAAAAAGTGGAACTGCTGAATTCTCTAACCTAACATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAGCAACTTCATGATTGGTTGGCACATTGGAACGAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGGCCAGTGATTCTGGTGCGAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTAGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTTAATGCCAGCGACAATAGGGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTTCATTTCAAAATGAATCAGCCAAAACATCACAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGGGTTGCCGATCTGATTGCGAGTATTAAGATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAACTGAAAAGCCTCGTGAACTATTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTAGTTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTTTCTATGTCAGTTATTAAATATGATGATATTCGGCAACGGCTTCTGAGCAGTAAGAAAGATGAAGACATCTCACCATTCACTGCTGTTGACAAGCTGTTTGGTTTTAATTCTGGGAAGTTGAGGATGGATGAAAGGATTGATCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGTGCTGTTAGCAAGGATGACACTGGGATCAAACGGATGGATTTGATCGCTCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTTTCTCAAAGTAGTTGTGTTGCTTCTTGTATAATCCCAGCTTCGTTATTGCATGGACAAAGAGAAACGCTTGAGCAGTATGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTCTGGAGGATTTGCATGTTCACATTCTTGCTTCACGGGAATCCTGTTCAGGGAGGGAACACCTACGAGTTGAGAACCTTACTCTCTTTCTAAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAGGCTGTTAAAACGGTGGTTGAATTTATGAGTCTATACTCAATCAGTCAAGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCACTAGATGGAGTTGCCCCTGCAGTCAAAGCTGCTCTAACCAAGGCATACAAAGAAGCAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTGCACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCAATTCTAGAACCTACTGAGGATACAGTTGAAGGTGCTGGGGGAGAGACATTGGTGGAAAGTGATGATGAAAACTCTGTGGACAACGAGGGCGAAGAAAATTCCACAAATGGCCAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAGATTCAAGCGCCAAGAAATCCGGTGGCAGAGGAAAAGGAGGTAGAACTTCTCAAGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGGATCTGCCACAAAGAGGAAAAGATGA 2907 42.41 MGDIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAGKTGPSGGESAGRQITSKYFASEKQEAKDAEETEVLPIIRKSPRDTKESPAKRKFQKYNEESPKASPLKKSNKVDDNDDDAVLSSSKKNMSEVTPNKKLKSGSGKGITQKPVEIEASDDEETKGTDSSLKPSGRGRGGKGSSAATIGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGKKAPPRQDPKKSVVKSEESPTKKNFQKVQAKSHKDLAAGASPAKQKSGTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMNQPKHHKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLVQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSKKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDTGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCVASCIIPASLLHGQRETLEQYERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKTVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEASKTHMVRAADLIALPGMKKAPKKRIAAILEPTEDTVEGAGGETLVESDDENSVDNEGEENSTNGQKLQLELQSLNKKGMQVQLDLKGVEDSSAKKSGGRGKGGRTSQASEKKGGRGSGSATKRKR* 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22087683 22100034 + CsaV3_6G038660.1 Csa06g02480 534107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02480 968 SMART BRCT_7 216 294 IPR001357 -
Csa06g02480 968 Pfam Replication factor RFC1 C terminal domain 679 841 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Csa06g02480 968 Pfam BRCA1 C Terminus (BRCT) domain 216 291 IPR001357 -
Csa06g02480 968 MobiDBLite consensus disorder prediction 1 215 - -
Csa06g02480 968 SMART AAA_5 402 540 IPR003593 -
Csa06g02480 968 MobiDBLite consensus disorder prediction 58 121 - -
Csa06g02480 968 PIRSF RFC1 1 942 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Csa06g02480 968 MobiDBLite consensus disorder prediction 148 163 - -
Csa06g02480 968 MobiDBLite consensus disorder prediction 296 325 - -
Csa06g02480 968 CDD BRCT_RFC1 214 292 - -
Csa06g02480 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 599 IPR027417 -
Csa06g02480 968 SUPERFAMILY post-AAA+ oligomerization domain-like 610 755 IPR008921 GO:0003677|GO:0006260
Csa06g02480 968 CDD HLD_clamp_RFC 539 597 - -
Csa06g02480 968 MobiDBLite consensus disorder prediction 122 139 - -
Csa06g02480 968 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g02480 968 Gene3D - 350 538 IPR027417 -
Csa06g02480 968 ProSiteProfiles BRCT domain profile. 214 292 IPR001357 -
Csa06g02480 968 Pfam ATPase family associated with various cellular activities (AAA) 406 518 IPR003959 GO:0005524|GO:0016887
Csa06g02480 968 Gene3D - 611 723 - -
Csa06g02480 968 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 939 - -
Csa06g02480 968 CDD AAA 391 539 - -
Csa06g02480 968 Gene3D BRCT domain 191 293 IPR036420 -
Csa06g02480 968 MobiDBLite consensus disorder prediction 921 968 - -
Csa06g02480 968 Gene3D - 539 609 - -
Csa06g02480 968 MobiDBLite consensus disorder prediction 294 344 - -
Csa06g02480 968 PANTHER REPLICATION FACTOR C SUBUNIT 1 13 939 - -
Csa06g02480 968 MobiDBLite consensus disorder prediction 198 213 - -
Csa06g02480 968 SUPERFAMILY BRCT domain 214 293 IPR036420 -
Csa06g02480 968 MobiDBLite consensus disorder prediction 875 907 - -
Csa06g02480 968 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01115 Csa-Chr3:8799383 Csa06g02480 Csa-Chr6:22087683 1.53E-21 dispersed
Csa04g01807 Csa-Chr4:17707824 Csa06g02480 Csa-Chr6:22087683 1.81E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02480 K10754 - csv:101204361 1832.38