Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02485 ATGGCGGCTCGAGCTGTTGTTCCTCAAAGACAACTACGAATCAGAGATGAAGGTAAGCCGAATGTGGTAGCAGCCGAAGGAAGAACAAGAAGAATTCTCAAAGACATAGGCAATCTCGTGCCTGATCAAGCCGTAGAAGGGAAACACGGGCCCCAACCACCAGATAAGAATAAAAGAGCAATCACCAAAAAAATAAATGGAGGAGTTGGGAAGGGAGTTAATGTAACGAAGGCCGCAATTACTGAGAAACAGAAACCGAAACCGAAGACTCTACTCAGCTTGGCCGATGAGGGACATATAATCAACATCAAAGATACTAAATCAAAGGACAAGAATAAGAAATCTCTGACTTCAACACTTAGTGCTAGAAGCAAGGCTGCTTGTGGAATCACCAATAAACCGCTGGATTCTTCAGTAACTAATATTGATGAAGCAGATGCCAACAATGAATTGGCCGTAGTTGAATACATCGATGACATGTACAAGTTTTACAAGCTTGCAGAAGGTGAGAGCATAGTATCAGATTACATGGGAACACAACCAGATTTGAATGCAAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTCCATCGAAAGTTTGAATTGATGCCGGAAACCCTTTATCTCGCTGTAAACATCGTCGATCGATTTCTTTCCTTAAAGACTGTACCAAGGAAGGAACTTCAATTGGTAGGTATCAGCTCTATGCTGATAGCGTGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTCTGGTGATGGAGAAAGTAATCTTGGGTAGGCTGGAATGGCTTCTAACAGTTCCTACACCTTATGTTTTTCTTGTTCGATATGTAAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTGGCTGAGCTTGGTTTGATGAACTATCAAATATCTATATCATATAGCCCTTCAACGATTGCTTCAGCCGCTGTTTATGTTGCACGATGTACACTTGAAAAGAACCCTATTTGGACAGCCACTTTGCATCACCATACAGGCTATGTTGAAGAGGAGTTGAAGGAATGTGCAGAACTCCTTGTGAACCTGCACCGTGGAGTTGTAGATTCCAAGCTCAAGGCTGTGTATAGAAAGTATACAAGTCCAGATCGTCGTGCTGTTTCTCTTCTTCCCCCAGCCAAAAGTTCAACTCCAGATTGCAGTCCAGAAGTATGA 1251 41.73 MAARAVVPQRQLRIRDEGKPNVVAAEGRTRRILKDIGNLVPDQAVEGKHGPQPPDKNKRAITKKINGGVGKGVNVTKAAITEKQKPKPKTLLSLADEGHIINIKDTKSKDKNKKSLTSTLSARSKAACGITNKPLDSSVTNIDEADANNELAVVEYIDDMYKFYKLAEGESIVSDYMGTQPDLNAKMRSILIDWLIEVHRKFELMPETLYLAVNIVDRFLSLKTVPRKELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYQISISYSPSTIASAAVYVARCTLEKNPIWTATLHHHTGYVEEELKECAELLVNLHRGVVDSKLKAVYRKYTSPDRRAVSLLPPAKSSTPDCSPEV* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22162575 22165183 + CsaV3_6G038710.1 Csa06g02485 534112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02485 416 SUPERFAMILY Cyclin-like 287 407 IPR036915 -
Csa06g02485 416 PANTHER CYCLIN-B1-4 23 407 - -
Csa06g02485 416 CDD CYCLIN 284 373 IPR013763 -
Csa06g02485 416 PIRSF Cyclin_A_B_D_E 2 97 IPR039361 -
Csa06g02485 416 PIRSF Cyclin_A_B_D_E 71 415 IPR039361 -
Csa06g02485 416 PANTHER CYCLINS 23 407 IPR039361 -
Csa06g02485 416 CDD CYCLIN 187 276 IPR013763 -
Csa06g02485 416 SMART Cyclin_C_2 286 405 IPR004367 -
Csa06g02485 416 ProSitePatterns Cyclins signature. 188 219 IPR006671 -
Csa06g02485 416 Gene3D - 159 401 - -
Csa06g02485 416 Gene3D - 173 284 - -
Csa06g02485 416 SMART cyclin_7 193 277 IPR013763 -
Csa06g02485 416 SMART cyclin_7 290 374 IPR013763 -
Csa06g02485 416 Pfam Cyclin, C-terminal domain 286 404 IPR004367 -
Csa06g02485 416 SUPERFAMILY Cyclin-like 148 281 IPR036915 -
Csa06g02485 416 Pfam Cyclin, N-terminal domain 159 283 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01909 Csa-Chr4:18838613 Csa06g02485 Csa-Chr6:22162575 5.41E-142 dispersed
Csa06g02485 Csa-Chr6:22162575 Csa07g01213 Csa-Chr7:11916314 7.67E-81 dispersed
Csa06g02485 Csa-Chr6:22162575 Csa04g02698 Csa-Chr4:26118950 2.14E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02485 K21777 - csv:101222873 776.933