Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02485 | ATGGCGGCTCGAGCTGTTGTTCCTCAAAGACAACTACGAATCAGAGATGAAGGTAAGCCGAATGTGGTAGCAGCCGAAGGAAGAACAAGAAGAATTCTCAAAGACATAGGCAATCTCGTGCCTGATCAAGCCGTAGAAGGGAAACACGGGCCCCAACCACCAGATAAGAATAAAAGAGCAATCACCAAAAAAATAAATGGAGGAGTTGGGAAGGGAGTTAATGTAACGAAGGCCGCAATTACTGAGAAACAGAAACCGAAACCGAAGACTCTACTCAGCTTGGCCGATGAGGGACATATAATCAACATCAAAGATACTAAATCAAAGGACAAGAATAAGAAATCTCTGACTTCAACACTTAGTGCTAGAAGCAAGGCTGCTTGTGGAATCACCAATAAACCGCTGGATTCTTCAGTAACTAATATTGATGAAGCAGATGCCAACAATGAATTGGCCGTAGTTGAATACATCGATGACATGTACAAGTTTTACAAGCTTGCAGAAGGTGAGAGCATAGTATCAGATTACATGGGAACACAACCAGATTTGAATGCAAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTCCATCGAAAGTTTGAATTGATGCCGGAAACCCTTTATCTCGCTGTAAACATCGTCGATCGATTTCTTTCCTTAAAGACTGTACCAAGGAAGGAACTTCAATTGGTAGGTATCAGCTCTATGCTGATAGCGTGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTCTGGTGATGGAGAAAGTAATCTTGGGTAGGCTGGAATGGCTTCTAACAGTTCCTACACCTTATGTTTTTCTTGTTCGATATGTAAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTGGCTGAGCTTGGTTTGATGAACTATCAAATATCTATATCATATAGCCCTTCAACGATTGCTTCAGCCGCTGTTTATGTTGCACGATGTACACTTGAAAAGAACCCTATTTGGACAGCCACTTTGCATCACCATACAGGCTATGTTGAAGAGGAGTTGAAGGAATGTGCAGAACTCCTTGTGAACCTGCACCGTGGAGTTGTAGATTCCAAGCTCAAGGCTGTGTATAGAAAGTATACAAGTCCAGATCGTCGTGCTGTTTCTCTTCTTCCCCCAGCCAAAAGTTCAACTCCAGATTGCAGTCCAGAAGTATGA | 1251 | 41.73 | MAARAVVPQRQLRIRDEGKPNVVAAEGRTRRILKDIGNLVPDQAVEGKHGPQPPDKNKRAITKKINGGVGKGVNVTKAAITEKQKPKPKTLLSLADEGHIINIKDTKSKDKNKKSLTSTLSARSKAACGITNKPLDSSVTNIDEADANNELAVVEYIDDMYKFYKLAEGESIVSDYMGTQPDLNAKMRSILIDWLIEVHRKFELMPETLYLAVNIVDRFLSLKTVPRKELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYQISISYSPSTIASAAVYVARCTLEKNPIWTATLHHHTGYVEEELKECAELLVNLHRGVVDSKLKAVYRKYTSPDRRAVSLLPPAKSSTPDCSPEV* | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22162575 | 22165183 | + | CsaV3_6G038710.1 | Csa06g02485 | 534112 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02485 | 416 | SUPERFAMILY | Cyclin-like | 287 | 407 | IPR036915 | - | |
Csa06g02485 | 416 | PANTHER | CYCLIN-B1-4 | 23 | 407 | - | - | |
Csa06g02485 | 416 | CDD | CYCLIN | 284 | 373 | IPR013763 | - | |
Csa06g02485 | 416 | PIRSF | Cyclin_A_B_D_E | 2 | 97 | IPR039361 | - | |
Csa06g02485 | 416 | PIRSF | Cyclin_A_B_D_E | 71 | 415 | IPR039361 | - | |
Csa06g02485 | 416 | PANTHER | CYCLINS | 23 | 407 | IPR039361 | - | |
Csa06g02485 | 416 | CDD | CYCLIN | 187 | 276 | IPR013763 | - | |
Csa06g02485 | 416 | SMART | Cyclin_C_2 | 286 | 405 | IPR004367 | - | |
Csa06g02485 | 416 | ProSitePatterns | Cyclins signature. | 188 | 219 | IPR006671 | - | |
Csa06g02485 | 416 | Gene3D | - | 159 | 401 | - | - | |
Csa06g02485 | 416 | Gene3D | - | 173 | 284 | - | - | |
Csa06g02485 | 416 | SMART | cyclin_7 | 193 | 277 | IPR013763 | - | |
Csa06g02485 | 416 | SMART | cyclin_7 | 290 | 374 | IPR013763 | - | |
Csa06g02485 | 416 | Pfam | Cyclin, C-terminal domain | 286 | 404 | IPR004367 | - | |
Csa06g02485 | 416 | SUPERFAMILY | Cyclin-like | 148 | 281 | IPR036915 | - | |
Csa06g02485 | 416 | Pfam | Cyclin, N-terminal domain | 159 | 283 | IPR006671 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01909 | Csa-Chr4:18838613 | Csa06g02485 | Csa-Chr6:22162575 | 5.41E-142 | dispersed | |
Csa06g02485 | Csa-Chr6:22162575 | Csa07g01213 | Csa-Chr7:11916314 | 7.67E-81 | dispersed | |
Csa06g02485 | Csa-Chr6:22162575 | Csa04g02698 | Csa-Chr4:26118950 | 2.14E-88 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02485 | K21777 | - | csv:101222873 | 776.933 |