Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02488 ATGAAACTTCGCATGGATGCACTCGCCATTACAACATTGGTAACTTTCCTAGCAACTTTTACTGCCATCTTGGCCGTACCATCGCCGATGGTCCCGGTCGATAAGGCACAATTAGAAGCGTGGTTTTCAGAAAATGTGAAGCCGTTTGCCGACCGTAATAAGGCTGAGCTTGATCCAGCGGTGGTGGCTGCAGAAGGAAACGTGACCATAGTTAAGGTAATGAGTGATGGAACGGGAGATTTCAAGACAGTCACTGAAGCTATTGCGAGCGTGCCAGTGAACAACAAGAATCGTGTAGTAATTTGGATTGGAGAAGGCGTTTATAAGGAGAAGCTTACCATTGAGAAAAATAAGCCTTTTATTACTCTTTGTGGCACTCCTAAAAACGTACCTACTTTGACATTTGATGGCGTTGCATCCAAATATGGCACGGTTTATAGCGCTACCTTGATTGTTGAGGCTGATTATTTCGTTGCGGCTAATTTGATCATTGAGAATACATCACCAAGGCCAAACGGGAGAAAAGAAGCACAAGCATTAGCAGCAAGATTTAGGGGAACTAAATCCGCGTTTTACAATTGCAAATTCCTTGGATTTCAAGATACCCTTTGTGACGACGACGGTTTACATCTCTACAAAGATTGCTTCATTCAAGGCACTGTTGATTTCGTTTTTGGAAAAGGAACTTCCCTTTATTTGAACACCGAATTGAATGTGGTGGGAGAGGGACAATTCGCAGTGATAACAGCTCATTCAAGAGAACAAGAAGCTGATGCTAGTGGATATTCGTTTGTTCATTGCAGCATTACCGGAAACGGTAAAGACACATTTTTGGGAAGAGCTTGGATGCCAAGATCTAGAGTTATCTTTGCCTACACTTCAATGATTGATATCATTCATCCCGAAGGCTGGAATGACATGAAGCATGCCGGTTTCGACAAGACGGTTATGTTCGGAGAATATAAGTGTTCAGGGCCAGGAGCTGTGTCGACCGGACGTGTAGCCTACGGCAAGCAATTGACTGATGTAGAAGTGAAGCCATTTCTTGGTCTGGAATACGTGCAAAGTGAGAAGTGGTTGCTTCCTCCTCCCAGTCCTCAAGTTTAG 1107 43.9 MKLRMDALAITTLVTFLATFTAILAVPSPMVPVDKAQLEAWFSENVKPFADRNKAELDPAVVAAEGNVTIVKVMSDGTGDFKTVTEAIASVPVNNKNRVVIWIGEGVYKEKLTIEKNKPFITLCGTPKNVPTLTFDGVASKYGTVYSATLIVEADYFVAANLIIENTSPRPNGRKEAQALAARFRGTKSAFYNCKFLGFQDTLCDDDGLHLYKDCFIQGTVDFVFGKGTSLYLNTELNVVGEGQFAVITAHSREQEADASGYSFVHCSITGNGKDTFLGRAWMPRSRVIFAYTSMIDIIHPEGWNDMKHAGFDKTVMFGEYKCSGPGAVSTGRVAYGKQLTDVEVKPFLGLEYVQSEKWLLPPPSPQV* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22168654 22179951 - CsaV3_6G038740.1 Csa06g02488 534115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02488 368 Gene3D - 67 363 IPR012334 -
Csa06g02488 368 SUPERFAMILY Pectin lyase-like 71 361 IPR011050 -
Csa06g02488 368 PANTHER PECTINESTERASE 63-RELATED 35 361 - -
Csa06g02488 368 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Csa06g02488 368 Pfam Pectinesterase 71 355 IPR000070 GO:0030599|GO:0042545
Csa06g02488 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02488 Csa-Chr6:22168654 Csa07g01935 Csa-Chr7:19147648 3.11E-85 dispersed
Csa06g02488 Csa-Chr6:22168654 Csa06g02489 Csa-Chr6:22183797 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02488 K01051 - csv:101205575 719.924