Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02489 ATGACATATTGCAATAATGCTCTTCGAGTTACAAGATGGATACTTTTTCTTGAAGTTTCTGCAGCCATAATCCTCGCCGCATCGCATATGATTCCAACCGAGAAGTCTGAACTAGACGGTTGGTATTCAGAGCATGTGAAGTCGTTTAACAAACGTGATAAGATGAAGCTTGATTCGGAGCTGGTGGCTGCAGAAGAAAACGCCACCGTGATTAAGGTAAGGGGTGATGGAAGTGGAGATTTCAAGACAATTACTGAAGCCATTGAAAGCGTGCCAGCGTGTAACACGAAACGTGTAGTGATTTGGATCGGAGGAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGATCTCCTAATAATATGCCTAATTTGACCTTCGATGGAGATGCTAGCAAATACGGCACCGTTTATAGTGCTACCTTGACGGTTGAAGCTGATTATTTCACTGCAGCTAATCTCATCATTGAGAATTCATCGCCAAGGCCAGATGGGAAAAGAAAAGGAGAGCAAGCATTAGCAGCAAGAATTTGGGGAAATAAAGTCGCAATTTATAATTGCAAATTCATTGGATTTCAAGATACCCTTTGCGACGATCGGGGTTTACATCTCTACAAAGATTGCTTCATTCAAGGCACTGTTGATTTCATTTTCGGAGGAGGAACTTCCCTTTATTTGAACACTCAGTTGGATGTGGTGGTCGATGGAGGATTGGGAGTGATAGCAGCCCATTCAAGAGAACAAGAATCTGAGTGCAGTGGATTCTCATTTGTGCATTGTAGCATTACAGGAACTGGCGGAAGAAACACTTATTTGGGAAGAGCTTGGAGGCCAAGATCTAGAGTTGTTTTTGCCTACACTACAATGGCTGATATTATTCATCCCAAAGGCTGGAACGACATGGACAATTTTGGTTACGACAAAACGGTTTCGTTCGGAGAATACAAGTGTTCGGGGCTGGGTTCGAACTTTAGCAAGCGTGTGCAATACGGCAAGCAATTGAGTGATGAAAAAGTGCAGCAGTTTGTTAGTCTTGAATACTTGAAGAGTGATACATGGCTACTTCCTCCTCCCAATCACGAAGATTTAGAAAATTAG 1122 42.07 MTYCNNALRVTRWILFLEVSAAIILAASHMIPTEKSELDGWYSEHVKSFNKRDKMKLDSELVAAEENATVIKVRGDGSGDFKTITEAIESVPACNTKRVVIWIGGGVYKEKLKIDRNKPFVTLYGSPNNMPNLTFDGDASKYGTVYSATLTVEADYFTAANLIIENSSPRPDGKRKGEQALAARIWGNKVAIYNCKFIGFQDTLCDDRGLHLYKDCFIQGTVDFIFGGGTSLYLNTQLDVVVDGGLGVIAAHSREQESECSGFSFVHCSITGTGGRNTYLGRAWRPRSRVVFAYTTMADIIHPKGWNDMDNFGYDKTVSFGEYKCSGLGSNFSKRVQYGKQLSDEKVQQFVSLEYLKSDTWLLPPPNHEDLEN* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22183797 22185965 + CsaV3_6G038750.1 Csa06g02489 534116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02489 373 PANTHER PECTINESTERASE 63-RELATED 34 363 - -
Csa06g02489 373 SUPERFAMILY Pectin lyase-like 68 363 IPR011050 -
Csa06g02489 373 Pfam Pectinesterase 72 358 IPR000070 GO:0030599|GO:0042545
Csa06g02489 373 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Csa06g02489 373 Gene3D - 65 365 IPR012334 -
Csa06g02489 373 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03021 Csa-Chr1:26341208 Csa06g02489 Csa-Chr6:22183797 1.96E-130 dispersed
Csa06g02489 Csa-Chr6:22183797 Csa07g01935 Csa-Chr7:19147648 8.43E-81 dispersed
Csa06g02488 Csa-Chr6:22168654 Csa06g02489 Csa-Chr6:22183797 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02489 K01051 - csv:101205808 649.047