Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02515 ATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCGAATTGACAGATGCGGTTCAAGGACTAGTTCTTTGCGATCAGAGCGATAAAGATCGGAGGGCTATGGCAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCTGTTCAAGAACAAGTAACTTGCGACCAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATCTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGTGCAACTTGCATCCTTCGATGGGCATCATACACTAAGAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCTTGATCGTTCATCGTTCTCTTGATGGGAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCCAATCATTGAAGAACGGGAGGAAACATATGATGATCCTGAGGATGACCAATACTATCCTTATGAGGATGATGATGAAGAGTTAGAGGATGCTTACTTGGGTGAATCACCATCTCTTCGCATTGGGAATCGAAGGTGGGGATACAATGGTTATGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGACCTAGTTCATCGAGGGAGCCCGTAACAAAACAGGCTTCTTCCAAGGACAAAACAGGCCGACGTGCTAAAAGGGCCTTGAAACGAGAAGCTGCAGATAAAGCAGCAGCAGCCAAGCATCAAGAGCATCTGGCTAGGTTTGGCCGGAAGTGA 831 46.69 MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22363926 22367461 - CsaV3_6G039010.1 Csa06g02515 534142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02515 276 SMART ring_2 79 121 IPR001841 -
Csa06g02515 276 MobiDBLite consensus disorder prediction 223 276 - -
Csa06g02515 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 145 IPR013083 -
Csa06g02515 276 Pfam Ring finger domain 78 122 IPR001841 -
Csa06g02515 276 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 39 276 - -
Csa06g02515 276 MobiDBLite consensus disorder prediction 237 276 - -
Csa06g02515 276 ProSitePatterns Zinc finger RING-type signature. 97 106 IPR017907 -
Csa06g02515 276 ProSiteProfiles Zinc finger RING-type profile. 79 122 IPR001841 -
Csa06g02515 276 SUPERFAMILY RING/U-box 78 129 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02515 - - csv:101206609 489.189