Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02517 | ATGTGGTCCGCTGCTGCTCAGCGTTCTCTCAATTACGGCTTTGGATCCGAGATGGGAATGGTTGGTCTTCGTGATGTCTACGTCGTTGCTCCGGCTTCTTCTTTCAACCAAAATCCTCAACAACACGATGTTAATCTCCTCTCCGATCCTCATTCTCTCGCTGTTTCCAATCCTGCCACTGCTCTCGGCGTTGGTGTAGGCGTTGGGGTTATTCCGCTACTTACCGCCGGTCCCTGCCTTGGAGTGGAGGAGGAGAATTTTTTCGGTAATCGTAGTAACAGAGGTGGAGGGATTCAGTTTCAACAATCGACGCAACATTATTTAAAGAAAACGCCGTCGGGTTCTCTCGATCATGTTTCCGGTACTAATAACGAGTTAATCGGTGGTGGAATCGGGGGTTCTGGTGGTTTGGCTTCGTCTTCGTCGGCGACGACGACGTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTAGTCACAGACGGTGTAGAACTTGCTGTAGAAGTCGAGGGTTCGATTGTGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCTCGACGGAGAGAACGGCAACTTATGGCGGTTACTGCTACCGCTGCCGCGGATGGCTCCTCCGCGTCCACCTCCGGCGCGAAGAAACCCCGGCTAATTCCCTCGCAAACGACTTCTCATACCTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAGTCATCAAGATGCTGGGAATAAAGAGGCACTGCCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCTGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCAGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGCGACGGTGGCGGTGGCGGTGGAACCATGAATAATCGGAATGGTTCATCTTCTTCCCCGCTTGTTGATCCATCGGATGTTTACAATACTGCCGGCTCCGGCAGCGGCGGCGTCCCGGGTTTTCTTGGTGGATCAAATTATGGTAATCAAATTAGTTGA | 1098 | 52.09 | MWSAAAQRSLNYGFGSEMGMVGLRDVYVVAPASSFNQNPQQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCLGVEEENFFGNRSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQDAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGGGGGGTMNNRNGSSSSPLVDPSDVYNTAGSGSGGVPGFLGGSNYGNQIS* | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22374067 | 22379539 | - | CsaV3_6G039030.1 | Csa06g02517 | 534144 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02517 | 365 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 18 | 364 | - | - | |
Csa06g02517 | 365 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 252 | 299 | IPR006511 | - | |
Csa06g02517 | 365 | Pfam | Domain of unknown function (DUF702) | 144 | 300 | - | - | |
Csa06g02517 | 365 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 18 | 364 | IPR007818 | GO:0003700|GO:0006355 | |
Csa06g02517 | 365 | MobiDBLite | consensus disorder prediction | 199 | 248 | - | - | |
Csa06g02517 | 365 | MobiDBLite | consensus disorder prediction | 197 | 252 | - | - | |
Csa06g02517 | 365 | MobiDBLite | consensus disorder prediction | 310 | 343 | - | - | |
Csa06g02517 | 365 | MobiDBLite | consensus disorder prediction | 322 | 343 | - | - | |
Csa06g02517 | 365 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 146 | 188 | IPR006510 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g03220 | Csa06g02517 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g02517 | Csa-Chr6:22374067 | Csa06g03294 | Csa-Chr6:27622500 | 1.55E-46 | dispersed | |
Csa05g02859 | Csa-Chr5:28935755 | Csa06g02517 | Csa-Chr6:22374067 | 1.50E-57 | transposed | |
Csa01g03220 | Csa-Chr1:28325257 | Csa06g02517 | Csa-Chr6:22374067 | 4.55E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32082 | PF05142 | DUF702 | 8.10E-62 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02517 | - | - | csv:101207487 | 628.246 |