Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02517 ATGTGGTCCGCTGCTGCTCAGCGTTCTCTCAATTACGGCTTTGGATCCGAGATGGGAATGGTTGGTCTTCGTGATGTCTACGTCGTTGCTCCGGCTTCTTCTTTCAACCAAAATCCTCAACAACACGATGTTAATCTCCTCTCCGATCCTCATTCTCTCGCTGTTTCCAATCCTGCCACTGCTCTCGGCGTTGGTGTAGGCGTTGGGGTTATTCCGCTACTTACCGCCGGTCCCTGCCTTGGAGTGGAGGAGGAGAATTTTTTCGGTAATCGTAGTAACAGAGGTGGAGGGATTCAGTTTCAACAATCGACGCAACATTATTTAAAGAAAACGCCGTCGGGTTCTCTCGATCATGTTTCCGGTACTAATAACGAGTTAATCGGTGGTGGAATCGGGGGTTCTGGTGGTTTGGCTTCGTCTTCGTCGGCGACGACGACGTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTAGTCACAGACGGTGTAGAACTTGCTGTAGAAGTCGAGGGTTCGATTGTGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCTCGACGGAGAGAACGGCAACTTATGGCGGTTACTGCTACCGCTGCCGCGGATGGCTCCTCCGCGTCCACCTCCGGCGCGAAGAAACCCCGGCTAATTCCCTCGCAAACGACTTCTCATACCTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAGTCATCAAGATGCTGGGAATAAAGAGGCACTGCCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCTGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCAGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGCGACGGTGGCGGTGGCGGTGGAACCATGAATAATCGGAATGGTTCATCTTCTTCCCCGCTTGTTGATCCATCGGATGTTTACAATACTGCCGGCTCCGGCAGCGGCGGCGTCCCGGGTTTTCTTGGTGGATCAAATTATGGTAATCAAATTAGTTGA 1098 52.09 MWSAAAQRSLNYGFGSEMGMVGLRDVYVVAPASSFNQNPQQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCLGVEEENFFGNRSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQDAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGGGGGGTMNNRNGSSSSPLVDPSDVYNTAGSGSGGVPGFLGGSNYGNQIS* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22374067 22379539 - CsaV3_6G039030.1 Csa06g02517 534144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02517 365 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 18 364 - -
Csa06g02517 365 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 252 299 IPR006511 -
Csa06g02517 365 Pfam Domain of unknown function (DUF702) 144 300 - -
Csa06g02517 365 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 18 364 IPR007818 GO:0003700|GO:0006355
Csa06g02517 365 MobiDBLite consensus disorder prediction 199 248 - -
Csa06g02517 365 MobiDBLite consensus disorder prediction 197 252 - -
Csa06g02517 365 MobiDBLite consensus disorder prediction 310 343 - -
Csa06g02517 365 MobiDBLite consensus disorder prediction 322 343 - -
Csa06g02517 365 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 146 188 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g03220 Csa06g02517 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02517 Csa-Chr6:22374067 Csa06g03294 Csa-Chr6:27622500 1.55E-46 dispersed
Csa05g02859 Csa-Chr5:28935755 Csa06g02517 Csa-Chr6:22374067 1.50E-57 transposed
Csa01g03220 Csa-Chr1:28325257 Csa06g02517 Csa-Chr6:22374067 4.55E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32082 PF05142 DUF702 8.10E-62 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02517 - - csv:101207487 628.246