Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02549 ATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTTTTCAGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCTCCGCCTGCAGCTGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGAAGATGATGATGAGACCACAAAAGATTCACATGCAAGTTTTGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACGCAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTACGCGGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCATTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCTAAACAATATCAAGGGATTCTAAGGCGAAGACAGGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACTATGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGCTCTGATGCAGCACCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAATCAAGGACCCAGTTGCATGAAGCATATGAAGCTCGAAGTTATATGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTACGATCTGGTGAGAGAGGTGATGATGGAGACTGCTCAGGACAGCAGCGAAGTATCTCAGAAAATCAAGCTGCACAGAGGCGTCTTGCCATCAAGTGA 1026 44.93 MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIVHSGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEARSYMNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQRSISENQAAQRRLAIK* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22607749 22610558 - CsaV3_6G039350.1 Csa06g02549 534176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02549 341 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Csa06g02549 341 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Csa06g02549 341 MobiDBLite consensus disorder prediction 206 220 - -
Csa06g02549 341 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Csa06g02549 341 MobiDBLite consensus disorder prediction 224 256 - -
Csa06g02549 341 MobiDBLite consensus disorder prediction 307 341 - -
Csa06g02549 341 MobiDBLite consensus disorder prediction 41 68 - -
Csa06g02549 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 328 IPR001289 GO:0003700|GO:0006355
Csa06g02549 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
Csa06g02549 341 MobiDBLite consensus disorder prediction 1 85 - -
Csa06g02549 341 Gene3D - 166 228 - -
Csa06g02549 341 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 328 - -
Csa06g02549 341 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Csa06g02549 341 ProSitePatterns NF-YA/HAP2 subunit signature. 171 191 IPR018362 GO:0003677|GO:0016602
Csa06g02549 341 MobiDBLite consensus disorder prediction 206 260 - -
Csa06g02549 341 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03504 Csa-Chr3:31370435 Csa06g02549 Csa-Chr6:22607749 4.17E-32 dispersed
Csa06g02549 Csa-Chr6:22607749 Csa07g02013 Csa-Chr7:19647054 7.49E-58 dispersed
Csa04g01062 Csa-Chr4:8513729 Csa06g02549 Csa-Chr6:22607749 8.64E-38 transposed
Csa01g03164 Csa-Chr1:27673273 Csa06g02549 Csa-Chr6:22607749 2.22E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32085 PF02045 CBFB_NFYA 1.90E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02549 K08064 - csv:101212961 655.595