Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02549 | ATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTTTTCAGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCTCCGCCTGCAGCTGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGAAGATGATGATGAGACCACAAAAGATTCACATGCAAGTTTTGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACGCAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTACGCGGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCATTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCTAAACAATATCAAGGGATTCTAAGGCGAAGACAGGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACTATGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGCTCTGATGCAGCACCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAATCAAGGACCCAGTTGCATGAAGCATATGAAGCTCGAAGTTATATGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTACGATCTGGTGAGAGAGGTGATGATGGAGACTGCTCAGGACAGCAGCGAAGTATCTCAGAAAATCAAGCTGCACAGAGGCGTCTTGCCATCAAGTGA | 1026 | 44.93 | MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIVHSGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEARSYMNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQRSISENQAAQRRLAIK* | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22607749 | 22610558 | - | CsaV3_6G039350.1 | Csa06g02549 | 534176 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02549 | 341 | PRINTS | CCAAT-binding transcription factor subunit B signature | 169 | 191 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g02549 | 341 | PRINTS | CCAAT-binding transcription factor subunit B signature | 200 | 223 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g02549 | 341 | MobiDBLite | consensus disorder prediction | 206 | 220 | - | - | |
Csa06g02549 | 341 | ProSiteProfiles | NF-YA/HAP2 family profile. | 166 | 226 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g02549 | 341 | MobiDBLite | consensus disorder prediction | 224 | 256 | - | - | |
Csa06g02549 | 341 | MobiDBLite | consensus disorder prediction | 307 | 341 | - | - | |
Csa06g02549 | 341 | MobiDBLite | consensus disorder prediction | 41 | 68 | - | - | |
Csa06g02549 | 341 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 31 | 328 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g02549 | 341 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 168 | 223 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g02549 | 341 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Csa06g02549 | 341 | Gene3D | - | 166 | 228 | - | - | |
Csa06g02549 | 341 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 31 | 328 | - | - | |
Csa06g02549 | 341 | SMART | cbf3 | 165 | 226 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g02549 | 341 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 171 | 191 | IPR018362 | GO:0003677|GO:0016602 | |
Csa06g02549 | 341 | MobiDBLite | consensus disorder prediction | 206 | 260 | - | - | |
Csa06g02549 | 341 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03504 | Csa-Chr3:31370435 | Csa06g02549 | Csa-Chr6:22607749 | 4.17E-32 | dispersed | |
Csa06g02549 | Csa-Chr6:22607749 | Csa07g02013 | Csa-Chr7:19647054 | 7.49E-58 | dispersed | |
Csa04g01062 | Csa-Chr4:8513729 | Csa06g02549 | Csa-Chr6:22607749 | 8.64E-38 | transposed | |
Csa01g03164 | Csa-Chr1:27673273 | Csa06g02549 | Csa-Chr6:22607749 | 2.22E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32085 | PF02045 | CBFB_NFYA | 1.90E-26 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02549 | K08064 | - | csv:101212961 | 655.595 |