Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02555 ATGGAAATGAAGACAGGAAGAAGAGATAGCAAAGAGAGCTATGGAGAAATGGTGGAAGAATTTATACCAAATCACAATGACTCACTTTCATTGGTTCTTTCTCGCTTTCAAGATATTGGCATTGATGCTGAAGCTACCGTTGCTCTTTTAGGAGCTCACTCAATTGGTCGAGTCCACTGTGTAAACTTAGTGAACCGACTCTATCCGACCGTGGACCCGACTTTGGATCCGAACCACGCACTTTATCTTCAAAAAAGGTGCCCAAACCCGGACCCGGACCCGAAGGCAGTCCAATACGCGAGAAACGATTTGGAATCGCCAATGGTGGTGGACAACAACTACTACAGAAATGTATTGGACCACAAGGCCCTTTTATTAGTGGATCAGCAATTGGGCTCAAGCCCAATAACTCTTCCTTATGTCCAACAAATGGCCTCCAATAACACCTACTTTCTGGCCCAATTTGCTAGGGCTTTGCTCTTGCTGTCTGAGAACAACCCTCTCACTGATGACCAAGGAGAGATTAGAAAGGATTGTCGACGTGTCAACAAATGA 555 45.23 MEMKTGRRDSKESYGEMVEEFIPNHNDSLSLVLSRFQDIGIDAEATVALLGAHSIGRVHCVNLVNRLYPTVDPTLDPNHALYLQKRCPNPDPDPKAVQYARNDLESPMVVDNNYYRNVLDHKALLLVDQQLGSSPITLPYVQQMASNNTYFLAQFARALLLLSENNPLTDDQGEIRKDCRRVNK* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22639940 22640666 - CsaV3_6G039410.1 Csa06g02555 534182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02555 184 SUPERFAMILY Heme-dependent peroxidases 2 183 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 PANTHER PEROXIDASE 21 1 181 - -
Csa06g02555 184 Gene3D - 2 183 - -
Csa06g02555 184 ProSiteProfiles Plant heme peroxidase family profile. 1 183 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 PRINTS Plant peroxidase signature 157 170 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 PRINTS Plant peroxidase signature 44 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 PRINTS Plant peroxidase signature 117 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 PRINTS Plant peroxidase signature 101 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 PANTHER PEROXIDASE 25-RELATED 1 181 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 Pfam Peroxidase 2 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 Gene3D Peroxidase, domain 2 23 162 - -
Csa06g02555 184 PRINTS Haem peroxidase superfamily signature 103 118 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g02555 184 PRINTS Haem peroxidase superfamily signature 45 60 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01078 Csa-Chr1:6689353 Csa06g02555 Csa-Chr6:22639940 3.64E-78 dispersed
Csa06g02555 Csa-Chr6:22639940 Csa04g00543 Csa-Chr4:3606838 1.91E-32 dispersed
Csa03g03263 Csa-Chr3:29846147 Csa06g02555 Csa-Chr6:22639940 1.41E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02555 K00430 - csv:101221151 367.466