Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02557 ATGATGATGTCTGGTATTGACTTTTCTGTTTCTTCTAATTGTATTGGAGAATTTGGTGATCATCATCGTCATCAACAACAAACTTCTCAACTTTCTCATAACCATCATCATCATCTGCTTCGTCTGAACCCTAATCCTATTCCTAACCCTATTATTCAAAATCTTGATTCTTCTTCAGCTTCTTCTCTTCCTCCTTCTCTCCCCAAGAAGAAGAGAAATTTGCCGGGAAAACCAGATCCAGATGCAGAGGTAATTGCTTTATCTCCGAACACACTAATGGCAACAAACAGATTCATATGTGAAATATGCAACAAAGGGTTTCAGAGAGACCAAAACTTACAACTACACAGAAGAGGACACAATTTGCCATGGAAGCTAAGACAAAGAAGCAGTAAAGAAGCAGTAATAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGTAGAGCACTTGGGGACCTAACTGGAATTAAAAAACATTATAGTAGAAAACATGGGGAGAAGAAATGGAAGTGCGAGAAATGCTGTAAGAAATATGCTGTTCAGTCTGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAGAGACTACAAATGTGACTGTGGAACACTCTTTTCAAGGAAGGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCAGTTACCTCACCAAATTCAAGACTTAATTTCATTGCCAGTAATAATAATTCAATAATCAAGTCCCAATTTCAAGACCATAATTTTGAATCATCACCATATATCCCACAAATTCTTCCACCCACTAATAATCTCTTCCAAATCTCAAACCAAGTCTTGAGTTTGAACAACAAAAATAATAATCACAATCCTTCAAAAACAGCCATTATGAACCTCACTCTGTCCTCCTTTACCCACAAACAACAACAACAACAACAAAGTGTAGCAGCTTATGATAACTCGCCATCGTTTTGCTCGGCCACGGGTGGTGGTGGTGGAGGGATGTCGGCGACGGCGCTGCTGTTGAAAGCGGCGCAATTGGGGTCGACGAAGAGCAATGATAACTCATTTTGTTCAAGGAGTAATAGTGTGGGAGTAGTTATGAGTTCATCATCTTCTTCAAACAATATTTCAGTTGAGAATGGTAATTATTTTGGGGGAAAGGGAAATGGGTTGAAGGATTTTTTTGGGAGGAAGGAATCAGGAGACGAGTTGATTATTCCATTAATGGAGTCGGAGATGACTAAATTTGCTAGTTCTATGAGCTCTGAGATGGGGTTTATTAGCCAATTCATTGGGAATAATAGTCTTAGATAA 1347 38.6 MMMSGIDFSVSSNCIGEFGDHHRHQQQTSQLSHNHHHHLLRLNPNPIPNPIIQNLDSSSASSLPPSLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEAVIVKKKVYICPEKCCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCCKKYAVQSDWKAHSKTCGTRDYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTSPNSRLNFIASNNNSIIKSQFQDHNFESSPYIPQILPPTNNLFQISNQVLSLNNKNNNHNPSKTAIMNLTLSSFTHKQQQQQQSVAAYDNSPSFCSATGGGGGGMSATALLLKAAQLGSTKSNDNSFCSRSNSVGVVMSSSSSSNNISVENGNYFGGKGNGLKDFFGRKESGDELIIPLMESEMTKFASSMSSEMGFISQFIGNNSLR* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22648905 22652594 + CsaV3_6G039430.1 Csa06g02557 534184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02557 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 56 386 - -
Csa06g02557 448 Gene3D Classic Zinc Finger 94 121 - -
Csa06g02557 448 MobiDBLite consensus disorder prediction 47 66 - -
Csa06g02557 448 Pfam Zinc-finger double-stranded RNA-binding 98 120 IPR022755 -
Csa06g02557 448 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Csa06g02557 448 Gene3D Classic Zinc Finger 135 225 - -
Csa06g02557 448 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 56 386 - -
Csa06g02557 448 SUPERFAMILY beta-beta-alpha zinc fingers 97 197 IPR036236 -
Csa06g02557 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Csa06g02557 448 MobiDBLite consensus disorder prediction 21 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02557 Csa-Chr6:22648905 Csa02g02630 Csa-Chr2:22847054 3.46E-116 dispersed
Csa03g03266 Csa-Chr3:29869314 Csa06g02557 Csa-Chr6:22648905 9.17E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32087 PF12171 zf-C2H2_jaz 6.40E-05 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02557 K25870 - csv:101221389 778.859