Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02561 ATGAAGTTTCGCAGTCTTCTTTCTACTTGTTGTTACTCTCCATCCTCGACAGCCATGGAAAGCAGCCGCCACGATAGACAGGACAGTGAGAGTTTTCGTGTCTACTCTTATAACGAGCTTAAATTAGCTACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGCGGATTTGGTACTGTTTACAAGGGTTGGCTTCGAGATGACAGGAAGATTGCTGTGAAGGTACTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATTGCTGAATTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTTTTATGTTGATGGAAGTAACAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCATATGTTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGATGGATAGCCAGAAAGGAAATTTTGATTGGAGTGGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCACATATAGTTCATAGAGATATAAAAGCCAGCAATATACTACTCGACCATAATTTTAAGCCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACAGTTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCGGAATATGCTGTGAGTGGCCATTTGACACGAAAATCCGATGTCTACAGCTTCGGAGTGTTGTTGTTAGAGATTGTTAGCGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAACACCATTTAGTACAAAGGGTATGGGAACATTACAAGGCAAATGAGCTAGTAAAATTGATAGATCCCGTGCTTGACATAGACTTCCGCAAAGAAGAGGCCGTTAGATTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACCCAACGAAACGACCACGAATGTCTCTTGCTGTAAGCATGTTGATAAAGGAGACTGACCTTAATGAACACAATATTTCACAACCAGCACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCATCAACTAGCTTTTTCTCCAAGGTTTCCACAGCAAATAGCATGTAA 1095 40.64 MKFRSLLSTCCYSPSSTAMESSRHDRQDSESFRVYSYNELKLATNGFSGANKVGEGGFGTVYKGWLRDDRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGFYVDGSNRYLVYDYMENNSLAYVLQGVRENRMRLRWIARKEILIGVARGLAYLHEEVEPHIVHRDIKASNILLDHNFKPKVADFGLAKLLRENSSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQRVWEHYKANELVKLIDPVLDIDFRKEEAVRFMKIGLLCVQENPTKRPRMSLAVSMLIKETDLNEHNISQPAHIIDFMDIKMGKGNSSTSFFSKVSTANSM* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22666172 22668482 + CsaV3_6G039470.1 Csa06g02561 534188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02561 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Csa06g02561 364 Gene3D Phosphorylase Kinase; domain 1 11 124 - -
Csa06g02561 364 SUPERFAMILY Protein kinase-like (PK-like) 30 328 IPR011009 -
Csa06g02561 364 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02561 364 PANTHER RECEPTOR-LIKE KINASE 17 344 - -
Csa06g02561 364 ProSiteProfiles Protein kinase domain profile. 47 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02561 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Csa06g02561 364 Gene3D Transferase(Phosphotransferase) domain 1 125 338 - -
Csa06g02561 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 344 - -
Csa06g02561 364 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02561 364 CDD STKc_IRAK 53 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00762 Csa-Chr4:5235626 Csa06g02561 Csa-Chr6:22666172 6.73E-128 dispersed
Csa06g02561 Csa-Chr6:22666172 Csa04g02258 Csa-Chr4:23201564 1.52E-94 dispersed
Csa06g02561 Csa-Chr6:22666172 Csa04g00800 Csa-Chr4:5599656 2.17E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78398 PF00069 Pkinase 2.90E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02561 - - csv:101214642 724.161