Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02564 ATGTCTAAGGATCTTGACCCTGCTTTTCCCACCGGCGACTACTTCGATCATCCCCCCGCTCCCTTCTTCGACCCTGAAGAGCTCTTGCGGTGGTCCTTTTACAGAGCTGTTATTGCCGAGTTCATTGCTACTCTTTTGTTTTTGTATGTTGGAGTTCTCACTGTGATTGGAAGTCAGAGTCAGGATTCTGCCGCTGTATGCGGCGGCGTTGGTGTTCAGGGCATTGCTTGGGCGTTCGGCGGCACCATCTTTGTTCTCGTTTACTGCACCGCCGGCATTTCTGGAGGACATATAAACCCAGCAGTAACATTTGGTCTGTTCTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGTACTGTACATAATGGCTCAGTGTTTAGGAGCCATTTGTGGGTGTGGTATAGTGAAGTCATTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCTGACGGCTTCAGCCCTGGTGCCGGCCTTGCCGCTGAGATCATCGGAACCTTTGTTCTTGTGTACACCGTCTTCTCTGCTACCGATCCCAAGAGAAAAGCTAGAGATTCCCACGTTCCTGTTCTAGCGCCGCTCCCCATTGGGTTTGCAGTGTTCGTGGTGAATTTAGCGACGATTCCGGTGACCGGCGCCGGGATTAACCCAGCTCGAAGCTTCGGCTCAGCAGTGATGTTCAACAACCACAAAGCTTGGGATAACCATTGGATATTTTGGATTGGACCTTTCATTGGAGCTGCAATGGCTGCAACTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCCAAGACCTTGAAATCCTTCAAAACTTCCTCCGTTTAG 837 50.42 MSKDLDPAFPTGDYFDHPPAPFFDPEELLRWSFYRAVIAEFIATLLFLYVGVLTVIGSQSQDSAAVCGGVGVQGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRAVLYIMAQCLGAICGCGIVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWIGPFIGAAMAATYHEFVLRGGAAKTLKSFKTSSV* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22678455 22680351 - CsaV3_6G039500.1 Csa06g02564 534191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02564 278 Gene3D Glycerol uptake facilitator protein. 20 278 IPR023271 -
Csa06g02564 278 SUPERFAMILY Aquaporin-like 26 263 IPR023271 -
Csa06g02564 278 CDD MIP 35 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 275 IPR034294 -
Csa06g02564 278 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Csa06g02564 278 PANTHER AQUAPORIN PIP2-1 6 275 - -
Csa06g02564 278 TIGRFAM MIP: MIP family channel proteins 39 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02564 278 Pfam Major intrinsic protein 29 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02564 Csa-Chr6:22678455 Csa06g02568 Csa-Chr6:22701550 5.06E-151 dispersed
Csa06g02624 Csa-Chr6:23064934 Csa06g02564 Csa-Chr6:22678455 7.07E-41 dispersed
Csa06g02564 Csa-Chr6:22678455 Csa06g02566 Csa-Chr6:22687696 2.03E-150 proximal
Csa03g03271 Csa-Chr3:29893968 Csa06g02564 Csa-Chr6:22678455 3.77E-140 wgd
Csa06g01193 Csa-Chr6:10078532 Csa06g02564 Csa-Chr6:22678455 3.69E-145 wgd
Csa06g02254 Csa-Chr6:20243217 Csa06g02564 Csa-Chr6:22678455 1.42E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02564 K09872 - csv:101215842 565.459