Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02566 ATGGCCAAAGATTCCGATGCCGGAGCCTTCGCCGCCAAGGACTACCACGACCCTCCACCGGCCCCTTTCATCGACCCCCACGAGTTCACTCAATGGTCATTTTACAGAGCCATCATCGCCGAATTCATCGCCACTCTCCTCTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAGCCAGTCCGACATTAAACATAACGGCCAAATCTGCGGTGGTGTCGGCATTCTCGGCATCGCTTGGGCTTTTGGTGGAATGATCTTCGTTCTTGTCTACTGTACTGCTGGAATCTCAGGTGGGCATATCAATCCTGCTGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTTGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTTAAATCCTTTCAAAAGGGTCTTTACACTCGTTACGGCGGTGGAGCCAATTCTCTCGCCGAGGGCTACAGTACCGGCACTGGCTTAGCCGCTGAGATCATCGGAACTTTCGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGCGCTAGAGATTCTCACATTCCAGTCCTAGCTCCTCTGCCAATTGGGTTCGCCGTGTTCATGGTTCACCTAGCCACCATTCCAGTCACCGGCACCGGTATTAACCCAGCTCGAAGCTTTGGTGCTGCAGTGGTTTTCAACGAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGGCCATTCATTGGAGCTGCAATTGCTGCATTTTATCACCAATTTATTTTGAGAGCTGGAGCTGTTAAAGCGTTGGGATCTTTCAGGAGTACTCAAAGTGTTTGA 855 49.94 MAKDSDAGAFAAKDYHDPPPAPFIDPHEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKHNGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYTRYGGGANSLAEGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNESKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTQSV* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22687696 22689507 - CsaV3_6G039520.1 Csa06g02566 534193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02566 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 SUPERFAMILY Aquaporin-like 27 268 IPR023271 -
Csa06g02566 284 PANTHER AQUAPORIN PIP2-4-RELATED 6 281 - -
Csa06g02566 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 281 IPR034294 -
Csa06g02566 284 TIGRFAM MIP: MIP family channel proteins 40 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02566 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Csa06g02566 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02566 Csa-Chr6:22687696 Csa06g02568 Csa-Chr6:22701550 0 dispersed
Csa07g02263 Csa-Chr7:21111287 Csa06g02566 Csa-Chr6:22687696 3.69E-44 dispersed
Csa06g02564 Csa-Chr6:22678455 Csa06g02566 Csa-Chr6:22687696 2.03E-150 proximal
Csa06g02566 Csa-Chr6:22687696 Csa06g02567 Csa-Chr6:22698135 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02566 K09872 - csv:101214884 572.778