Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02567 ATGCCGAAGGATATTGAAGCTGGAGCGCATGGTGGGTTCAGTGGAAAGGATTATGAAGATCCACCGCCTGCTCCATTGATCGACCCACATGAGTTTGCTCAGTGGTCATTTTACAGAGCTATTATAGCCGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTTATTGGGTATAAAGTTCAGAGTGATGTTAAGAATGGAGGGGAGACTTGTGGCGGCGTTGGAATTTTGGGTATTGCTTGGGCTTTTGGTGGCATGATTTTTGTCCTTGTTTACTGCACCGCTGGGATTTCTGGGGGACATATAAATCCGGCAGTGACTTTTGGGCTATTTTTGGCTCGTAAGGTGTCTTTGGTGAGAGCCATATTGTACATGGCGGCTCAGAGTTTAGGGGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTATACTGAGTACGGTGGTGGAGCCAATTCCCTCGCCGACGGCTACAGCACGGGCACTGGATTAGCCGCTGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCCCACGTCCCCGTTTTGGCGCCACTTCCGATTGGGTTCGCGGTGTTCATGGTTCATTTGGCCACGATTCCGATCACCGGAACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCAGTTGTGTTCAACAAATCCAAGCCGTGGGATGATCAGTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCCATAGCTGCAATTTATCATCAATTCATCTTAAGAGCAGGAGCAGCCAAAGCTCTAGGATCATTCTCAAGTTCCTAA 855 48.42 MPKDIEAGAHGGFSGKDYEDPPPAPLIDPHEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDVKNGGETCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQSLGAICGCALVKAFQNAHYTEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKALGSFSSS* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22698135 22699943 + CsaV3_6G039530.1 Csa06g02567 534194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02567 284 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Csa06g02567 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Csa06g02567 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02567 284 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Csa06g02567 284 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 1 283 - -
Csa06g02567 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 283 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02567 Csa-Chr6:22698135 Csa06g02569 Csa-Chr6:22706112 4.03E-151 dispersed
Csa06g02566 Csa-Chr6:22687696 Csa06g02567 Csa-Chr6:22698135 0 tandem
Csa06g02567 Csa-Chr6:22698135 Csa06g02568 Csa-Chr6:22701550 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02567 K09872 - csv:101216085 567.77