Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02567 | ATGCCGAAGGATATTGAAGCTGGAGCGCATGGTGGGTTCAGTGGAAAGGATTATGAAGATCCACCGCCTGCTCCATTGATCGACCCACATGAGTTTGCTCAGTGGTCATTTTACAGAGCTATTATAGCCGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTTATTGGGTATAAAGTTCAGAGTGATGTTAAGAATGGAGGGGAGACTTGTGGCGGCGTTGGAATTTTGGGTATTGCTTGGGCTTTTGGTGGCATGATTTTTGTCCTTGTTTACTGCACCGCTGGGATTTCTGGGGGACATATAAATCCGGCAGTGACTTTTGGGCTATTTTTGGCTCGTAAGGTGTCTTTGGTGAGAGCCATATTGTACATGGCGGCTCAGAGTTTAGGGGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTATACTGAGTACGGTGGTGGAGCCAATTCCCTCGCCGACGGCTACAGCACGGGCACTGGATTAGCCGCTGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCCCACGTCCCCGTTTTGGCGCCACTTCCGATTGGGTTCGCGGTGTTCATGGTTCATTTGGCCACGATTCCGATCACCGGAACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCAGTTGTGTTCAACAAATCCAAGCCGTGGGATGATCAGTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCCATAGCTGCAATTTATCATCAATTCATCTTAAGAGCAGGAGCAGCCAAAGCTCTAGGATCATTCTCAAGTTCCTAA | 855 | 48.42 | MPKDIEAGAHGGFSGKDYEDPPPAPLIDPHEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDVKNGGETCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQSLGAICGCALVKAFQNAHYTEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKALGSFSSS* | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22698135 | 22699943 | + | CsaV3_6G039530.1 | Csa06g02567 | 534194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02567 | 284 | Pfam | Major intrinsic protein | 32 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | Gene3D | Glycerol uptake facilitator protein. | 24 | 284 | IPR023271 | - | |
Csa06g02567 | 284 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Csa06g02567 | 284 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | TIGRFAM | MIP: MIP family channel proteins | 43 | 265 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | CDD | MIP | 39 | 269 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02567 | 284 | SUPERFAMILY | Aquaporin-like | 30 | 271 | IPR023271 | - | |
Csa06g02567 | 284 | PANTHER | PLASMAMEMBRANE INTRINSIC PROTEIN 25 | 1 | 283 | - | - | |
Csa06g02567 | 284 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 283 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g02567 | Csa-Chr6:22698135 | Csa06g02569 | Csa-Chr6:22706112 | 4.03E-151 | dispersed | |
Csa06g02566 | Csa-Chr6:22687696 | Csa06g02567 | Csa-Chr6:22698135 | 0 | tandem | |
Csa06g02567 | Csa-Chr6:22698135 | Csa06g02568 | Csa-Chr6:22701550 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02567 | K09872 | - | csv:101216085 | 567.77 |