Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02568 ATGTCTAAGGATCTTGAAGCTGGTGGATTCGCCGTCAAGGATTACCAAGACCCACCTCCAGCTCCATTGATCGATGCCGAAGAGTTAACTCAATGGTCTTTTTACAGAGCTATCATTGCCGAGTTCGTCGCCACTCTTTTGTTCTTGTACGTCACCGTTCTCACTGTCATTGGCTACAGTAGCCAATCCGACACTAAAAACGGCGGCCAAATCTGTGGCGGCGTCGGCATTCTCGGCATTGCTTGGGCATTTGGTGGCATGATCTTCGTTCTCGTTTACTGCACTGCTGGAATTTCCGGTGGTCATATTAACCCAGCGGTGACTTTTGGGTTGTTCTTGGCGCGGAAGGTGTCTTTAACTAGAGCAATTCTTTACATGGTGGCTCAATGTTTGGGCGCCATTTGTGGCTGCGCTTTGGTAAAATCATTCCAGAAGGCTCTTTACAATGAGCACGGAGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACCGGCACCGGCTTAGCCGCGGAGATAATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACAGATCCCAAGAGAAATGCTAGAGATTCTCACGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCTATCACCGGCACCGGAATCAACCCAGCTCGAAGTTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCATGGGATGACCAGTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATTGCTGCAATTTATCACCAGGTTGTGTTGAGGGCAGGAGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCGACTGCCGTATGA 855 49.71 MSKDLEAGGFAVKDYQDPPPAPLIDAEELTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLTRAILYMVAQCLGAICGCALVKSFQKALYNEHGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQVVLRAGAVKALGSFRSSTAV* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22701550 22703370 + CsaV3_6G039540.1 Csa06g02568 534195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02568 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 2 281 - -
Csa06g02568 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 281 IPR034294 -
Csa06g02568 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Csa06g02568 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02568 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Csa06g02568 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03271 Csa-Chr3:29893968 Csa06g02568 Csa-Chr6:22701550 2.67E-159 dispersed
Csa05g02810 Csa-Chr5:28635798 Csa06g02568 Csa-Chr6:22701550 4.49E-170 dispersed
Csa06g01193 Csa-Chr6:10078532 Csa06g02568 Csa-Chr6:22701550 2.50E-170 dispersed
Csa06g02254 Csa-Chr6:20243217 Csa06g02568 Csa-Chr6:22701550 8.14E-161 dispersed
Csa06g02564 Csa-Chr6:22678455 Csa06g02568 Csa-Chr6:22701550 5.06E-151 dispersed
Csa06g02566 Csa-Chr6:22687696 Csa06g02568 Csa-Chr6:22701550 0 dispersed
Csa06g02568 Csa-Chr6:22701550 Csa07g00108 Csa-Chr7:967881 3.46E-155 dispersed
Csa06g02567 Csa-Chr6:22698135 Csa06g02568 Csa-Chr6:22701550 0 tandem
Csa06g02568 Csa-Chr6:22701550 Csa06g02569 Csa-Chr6:22706112 5.16E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02568 K09872 - csv:101215366 556.984