Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02568 | ATGTCTAAGGATCTTGAAGCTGGTGGATTCGCCGTCAAGGATTACCAAGACCCACCTCCAGCTCCATTGATCGATGCCGAAGAGTTAACTCAATGGTCTTTTTACAGAGCTATCATTGCCGAGTTCGTCGCCACTCTTTTGTTCTTGTACGTCACCGTTCTCACTGTCATTGGCTACAGTAGCCAATCCGACACTAAAAACGGCGGCCAAATCTGTGGCGGCGTCGGCATTCTCGGCATTGCTTGGGCATTTGGTGGCATGATCTTCGTTCTCGTTTACTGCACTGCTGGAATTTCCGGTGGTCATATTAACCCAGCGGTGACTTTTGGGTTGTTCTTGGCGCGGAAGGTGTCTTTAACTAGAGCAATTCTTTACATGGTGGCTCAATGTTTGGGCGCCATTTGTGGCTGCGCTTTGGTAAAATCATTCCAGAAGGCTCTTTACAATGAGCACGGAGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACCGGCACCGGCTTAGCCGCGGAGATAATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACAGATCCCAAGAGAAATGCTAGAGATTCTCACGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCTATCACCGGCACCGGAATCAACCCAGCTCGAAGTTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCATGGGATGACCAGTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATTGCTGCAATTTATCACCAGGTTGTGTTGAGGGCAGGAGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCGACTGCCGTATGA | 855 | 49.71 | MSKDLEAGGFAVKDYQDPPPAPLIDAEELTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLTRAILYMVAQCLGAICGCALVKSFQKALYNEHGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQVVLRAGAVKALGSFRSSTAV* | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22701550 | 22703370 | + | CsaV3_6G039540.1 | Csa06g02568 | 534195 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02568 | 284 | CDD | MIP | 36 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | PANTHER | PLASMAMEMBRANE INTRINSIC PROTEIN 25 | 2 | 281 | - | - | |
Csa06g02568 | 284 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 2 | 281 | IPR034294 | - | |
Csa06g02568 | 284 | Gene3D | Glycerol uptake facilitator protein. | 21 | 284 | IPR023271 | - | |
Csa06g02568 | 284 | Pfam | Major intrinsic protein | 28 | 263 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | TIGRFAM | MIP: MIP family channel proteins | 40 | 262 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | PRINTS | Major intrinsic protein family signature | 36 | 55 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | PRINTS | Major intrinsic protein family signature | 84 | 108 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | PRINTS | Major intrinsic protein family signature | 121 | 140 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | PRINTS | Major intrinsic protein family signature | 170 | 188 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | PRINTS | Major intrinsic protein family signature | 206 | 228 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | PRINTS | Major intrinsic protein family signature | 246 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g02568 | 284 | SUPERFAMILY | Aquaporin-like | 28 | 268 | IPR023271 | - | |
Csa06g02568 | 284 | ProSitePatterns | MIP family signature. | 102 | 110 | IPR022357 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03271 | Csa-Chr3:29893968 | Csa06g02568 | Csa-Chr6:22701550 | 2.67E-159 | dispersed | |
Csa05g02810 | Csa-Chr5:28635798 | Csa06g02568 | Csa-Chr6:22701550 | 4.49E-170 | dispersed | |
Csa06g01193 | Csa-Chr6:10078532 | Csa06g02568 | Csa-Chr6:22701550 | 2.50E-170 | dispersed | |
Csa06g02254 | Csa-Chr6:20243217 | Csa06g02568 | Csa-Chr6:22701550 | 8.14E-161 | dispersed | |
Csa06g02564 | Csa-Chr6:22678455 | Csa06g02568 | Csa-Chr6:22701550 | 5.06E-151 | dispersed | |
Csa06g02566 | Csa-Chr6:22687696 | Csa06g02568 | Csa-Chr6:22701550 | 0 | dispersed | |
Csa06g02568 | Csa-Chr6:22701550 | Csa07g00108 | Csa-Chr7:967881 | 3.46E-155 | dispersed | |
Csa06g02567 | Csa-Chr6:22698135 | Csa06g02568 | Csa-Chr6:22701550 | 0 | tandem | |
Csa06g02568 | Csa-Chr6:22701550 | Csa06g02569 | Csa-Chr6:22706112 | 5.16E-160 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02568 | K09872 | - | csv:101215366 | 556.984 |