Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02569 ATGTCCAACAACATTGATGGAAGAAGCAATGTCAAGGACTACCAAGACCCACCTCCCGCTCCCTTCATCGATTCCGACGAGTTCACTCAATGGTCATTTTACAGAGCCATTATTGCAGAGTTCGTTGCCACGCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGACTCTCCGACACCAATATCTGCGGCGGCGTCGGCGCTTTAGGCATTTCCTGGGCCGTCGGCGGCATGATCTTCGTCCTTGTTTATTGCACTGCTGGAATTTCTGGTGGCCATATTAATCCGGCGGTGACGTTCGGGCTGCTGTTAGCTCGAAAAATCTCCCTAGTCAGAGCTTTTTCTTACATTTTGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGGGTTAGCTAAATCATTACAAAAGACTTATTACGTTCAGTACAACGGCGCAGCCAATATGGTGGCCAATGAGTACAGCATCGGTACCGGCTTAGCCGCAGAGATAATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGACCCCAAAAGAAACGCTAGAGATTCTCACATCCCAGTTTTGGCACCACTCCCAATTGGGTTCGCTGTGACTATGGTTCATCTAGCTACCATTCCGATCACCGGCACCGGCATCAACCCAGCTAGAAGCTTAGGAGCTGCTGTGATTTTTAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGGCCATTCATTGGAGCTGCCATTGCTGCACTTTATCATGTAGTGATCATAAGGGCAGGAACCATTAAAGCTCTGGCTTCCTTCAGAAGTTCATCTGCTCTATAA 840 48.1 MSNNIDGRSNVKDYQDPPPAPFIDSDEFTQWSFYRAIIAEFVATLLFLYILVLTVIGNARLSDTNICGGVGALGISWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISLVRAFSYILAQCLGAICGCGLAKSLQKTYYVQYNGAANMVANEYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVTMVHLATIPITGTGINPARSLGAAVIFNKAKAWDHHWIFWVGPFIGAAIAALYHVVIIRAGTIKALASFRSSSAL* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22706112 22707760 + CsaV3_6G039550.1 Csa06g02569 534196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02569 279 Pfam Major intrinsic protein 28 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 PANTHER AQUAPORIN PIP2-4-RELATED 8 276 - -
Csa06g02569 279 CDD MIP 35 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 Gene3D Glycerol uptake facilitator protein. 20 279 IPR023271 -
Csa06g02569 279 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 -
Csa06g02569 279 TIGRFAM MIP: MIP family channel proteins 39 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02569 279 SUPERFAMILY Aquaporin-like 27 263 IPR023271 -
Csa06g02569 279 ProSitePatterns MIP family signature. 97 105 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02567 Csa-Chr6:22698135 Csa06g02569 Csa-Chr6:22706112 4.03E-151 dispersed
Csa06g02569 Csa-Chr6:22706112 Csa07g00108 Csa-Chr7:967881 1.54E-139 dispersed
Csa06g02568 Csa-Chr6:22701550 Csa06g02569 Csa-Chr6:22706112 5.16E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02569 K09872 - csv:101215604 541.191