Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02572 ATGGAGATTATCAATGACCACAATAAGGTTATTCTGATCAATGGCGAAGCTGGGAGGAGGAGGAACAGTGAGAGAAGGAAAGAGGTGGGAATAATTTCTTGTATTTCTGATGAAGATTATGACCATGATCGAGATCATGTGGTGAAGGGAATGATACTAGATCCAACTTTGCCCATATTGAACAAATGGAACAGGGTTTTTCTAGTGGCTTCTCTAGTCTCACTATTTGTTGACCCCCTCTTCTTCTTCCTACCGGTGGTGAACGCGGAGGACGGGTGCATCCAAATGAGTACAGAATTGGGTGTGGCGTTGACAGTGGTCCGATCCATGGCGGATGTGTTCTACATAGCGCACATACTCATTAGGTTTAGGACAGCTTATGTAGCTCCCTCCTCCAGAATCTTCGGGAGAGGAGACCTCGTGATTCACCCTTCTAAGATCGCAGCAAACTATCTTGGTTTCGAGTTTTGGCTTCATTTTGCTGCTGCATTGCCTCTTCCACAGGCATTCATATGGATTGCAATTCCAAAAATGAGGGGATGGAGTTGCATAGTTCGGTTGTGCATTCTGTTTCAGTACGTGTTGAGGTTGTATCTCATCTTCCCTTTATCAGATCAAATCATTAAGGCCACTGGAGTTCTGATGAAAACAGCTTGGGTTGGAGCTGTTTATAACCTAATGCTCTTTATGCTAGCAAGCCATGTATTGGGGTCGTGCTGGTACCTTCTATCCATAGGAAGACAAATGGAATGCTGGAAAAAAGTGTGCAATTTGGGGCATTACTTGGATTGTGAATATGAGCATTTTTATTGTAAAGCTGCACAAAGAGATCATCCTGCTTGGTGGTTTCATCTTAAAGCAAGCAATATCTCAGATTTATGTAATCCAACTGCTACCAATTTCTTCCACTTTGGGATTTTTTCTGATTCTTTTGCTTCAACTTCTTCCCCCTTCATCACTAGGTACTTGTACTGTTTCTGGTGGGGATTGAGGAATTTGAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAGATCAATTTCGCTATTGTCATTGCCATTCTCGGGTTGGTGCTTTTTGCTCTTCTCATTGGAAATATGCAAGTAATTATCTAA 1125 42.4 MEIINDHNKVILINGEAGRRRNSERRKEVGIISCISDEDYDHDRDHVVKGMILDPTLPILNKWNRVFLVASLVSLFVDPLFFFLPVVNAEDGCIQMSTELGVALTVVRSMADVFYIAHILIRFRTAYVAPSSRIFGRGDLVIHPSKIAANYLGFEFWLHFAAALPLPQAFIWIAIPKMRGWSCIVRLCILFQYVLRLYLIFPLSDQIIKATGVLMKTAWVGAVYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCNLGHYLDCEYEHFYCKAAQRDHPAWWFHLKASNISDLCNPTATNFFHFGIFSDSFASTSSPFITRYLYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAILGLVLFALLIGNMQVII* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22721654 22723996 + CsaV3_6G039580.1 Csa06g02572 534199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02572 374 Pfam Ion transport protein 63 371 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa06g02572 374 PANTHER PROTEIN CNGC15A 20 372 - -
Csa06g02572 374 PRINTS EAG/ELK/ERG potassium channel family signature 231 241 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g02572 374 PRINTS EAG/ELK/ERG potassium channel family signature 348 359 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g02572 374 PRINTS EAG/ELK/ERG potassium channel family signature 119 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g02572 374 PRINTS EAG/ELK/ERG potassium channel family signature 366 374 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g02572 374 PRINTS EAG/ELK/ERG potassium channel family signature 322 339 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g02572 374 Gene3D - 67 374 - -
Csa06g02572 374 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 20 372 - -
Csa06g02572 374 SUPERFAMILY Voltage-gated potassium channels 62 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02572 Csa-Chr6:22721654 Csa03g03918 Csa-Chr3:34344343 1.86E-102 dispersed
Csa06g01202 Csa-Chr6:10197240 Csa06g02572 Csa-Chr6:22721654 5.71E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02572 K05391 - csv:101221856 745.732