Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02573 | ATGCAACACAGACAATTACCAAATCAATTGAAACAATGTGTAAGAAACTATGACCAATTCCGATGGATTGCAACCCACGGCGTCGACGAACAACAAATTCTAAAATCCCTTCCTCTCGATCTCCGACGACACATCAAACGCCATCTCTGTTTAGATCTCCTCCGTCAAGTTCCTCTGCTAGACGAAATGGAAGAAACAATGTTAGACGCAATTTGCGAGAGATTAAACCCCTATTTAATCACTTCCAACACCTATTTAATTCGAGAAGGCGACCCAGTTAACGAAATGCTGTTCATAATCCGTGGGTATTTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTCTTCAACTCGAGCCGCCTTGGGCCCAGTGATTTCTGCGGTGAGGAGTTGCTACCTTGGGCTTTGGTTGATGATCCTAGGACGGCAGCGGTGTTTCCGTCGTCAACCAGGACGGTGAAGGCGGTGACGGAAGTGGAAGGGTTCGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCAGCGCAATTTCGGAAGCTGCATAGTAAACAGATTAGGAGTACATTTAGGTTTTATTCGCATCAATGGCGGACATGGGCGGCGTGTTTCATTCAGGCGGCGTGGTTTAGGTATAAGCGGCGGATGAAGAAGGAGGAAGAAGATGAGATTAATGTTGTGAGGAAGATGAATGTTGTTCATCATAGGTCGTTGGACTTAGAATCAACTCAAATTACTACAAAAACCACCATAAAATATGGAAAAGAAACCACTTTCATATCTACTACTCCCGGTCTTGTCAAAGACAAAAAAGATACGTCTAGAAGAGAAGATGGGTGGACGGATGGAACTCTGTTTCTTGTTTGGTTCTAA | 870 | 45.63 | MQHRQLPNQLKQCVRNYDQFRWIATHGVDEQQILKSLPLDLRRHIKRHLCLDLLRQVPLLDEMEETMLDAICERLNPYLITSNTYLIREGDPVNEMLFIIRGYLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALVDDPRTAAVFPSSTRTVKAVTEVEGFALVAEDLKFVAAQFRKLHSKQIRSTFRFYSHQWRTWAACFIQAAWFRYKRRMKKEEEDEINVVRKMNVVHHRSLDLESTQITTKTTIKYGKETTFISTTPGLVKDKKDTSRREDGWTDGTLFLVWF* | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22724202 | 22726999 | + | CsaV3_6G039590.1 | Csa06g02573 | 534200 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02573 | 289 | SUPERFAMILY | cAMP-binding domain-like | 1 | 182 | IPR018490 | - | |
Csa06g02573 | 289 | CDD | CAP_ED | 59 | 192 | IPR000595 | - | |
Csa06g02573 | 289 | SMART | cnmp_10 | 59 | 192 | IPR000595 | - | |
Csa06g02573 | 289 | Gene3D | Helix hairpin bin | 1 | 50 | - | - | |
Csa06g02573 | 289 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 59 | 146 | IPR000595 | - | |
Csa06g02573 | 289 | Gene3D | Jelly Rolls | 57 | 179 | IPR014710 | - | |
Csa06g02573 | 289 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 1 | 242 | - | - | |
Csa06g02573 | 289 | PANTHER | PROTEIN CNGC15A | 1 | 242 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g02573 | Csa-Chr6:22724202 | Csa02g00546 | Csa-Chr2:3839081 | 4.52E-102 | dispersed | |
Csa06g02573 | Csa-Chr6:22724202 | Csa06g01202 | Csa-Chr6:10197240 | 1.63E-119 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02573 | K05391 | - | csv:101221856 | 489.189 |