Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02573 ATGCAACACAGACAATTACCAAATCAATTGAAACAATGTGTAAGAAACTATGACCAATTCCGATGGATTGCAACCCACGGCGTCGACGAACAACAAATTCTAAAATCCCTTCCTCTCGATCTCCGACGACACATCAAACGCCATCTCTGTTTAGATCTCCTCCGTCAAGTTCCTCTGCTAGACGAAATGGAAGAAACAATGTTAGACGCAATTTGCGAGAGATTAAACCCCTATTTAATCACTTCCAACACCTATTTAATTCGAGAAGGCGACCCAGTTAACGAAATGCTGTTCATAATCCGTGGGTATTTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTCTTCAACTCGAGCCGCCTTGGGCCCAGTGATTTCTGCGGTGAGGAGTTGCTACCTTGGGCTTTGGTTGATGATCCTAGGACGGCAGCGGTGTTTCCGTCGTCAACCAGGACGGTGAAGGCGGTGACGGAAGTGGAAGGGTTCGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCAGCGCAATTTCGGAAGCTGCATAGTAAACAGATTAGGAGTACATTTAGGTTTTATTCGCATCAATGGCGGACATGGGCGGCGTGTTTCATTCAGGCGGCGTGGTTTAGGTATAAGCGGCGGATGAAGAAGGAGGAAGAAGATGAGATTAATGTTGTGAGGAAGATGAATGTTGTTCATCATAGGTCGTTGGACTTAGAATCAACTCAAATTACTACAAAAACCACCATAAAATATGGAAAAGAAACCACTTTCATATCTACTACTCCCGGTCTTGTCAAAGACAAAAAAGATACGTCTAGAAGAGAAGATGGGTGGACGGATGGAACTCTGTTTCTTGTTTGGTTCTAA 870 45.63 MQHRQLPNQLKQCVRNYDQFRWIATHGVDEQQILKSLPLDLRRHIKRHLCLDLLRQVPLLDEMEETMLDAICERLNPYLITSNTYLIREGDPVNEMLFIIRGYLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALVDDPRTAAVFPSSTRTVKAVTEVEGFALVAEDLKFVAAQFRKLHSKQIRSTFRFYSHQWRTWAACFIQAAWFRYKRRMKKEEEDEINVVRKMNVVHHRSLDLESTQITTKTTIKYGKETTFISTTPGLVKDKKDTSRREDGWTDGTLFLVWF* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22724202 22726999 + CsaV3_6G039590.1 Csa06g02573 534200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02573 289 SUPERFAMILY cAMP-binding domain-like 1 182 IPR018490 -
Csa06g02573 289 CDD CAP_ED 59 192 IPR000595 -
Csa06g02573 289 SMART cnmp_10 59 192 IPR000595 -
Csa06g02573 289 Gene3D Helix hairpin bin 1 50 - -
Csa06g02573 289 ProSiteProfiles cAMP/cGMP binding motif profile. 59 146 IPR000595 -
Csa06g02573 289 Gene3D Jelly Rolls 57 179 IPR014710 -
Csa06g02573 289 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 242 - -
Csa06g02573 289 PANTHER PROTEIN CNGC15A 1 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02573 Csa-Chr6:22724202 Csa02g00546 Csa-Chr2:3839081 4.52E-102 dispersed
Csa06g02573 Csa-Chr6:22724202 Csa06g01202 Csa-Chr6:10197240 1.63E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02573 K05391 - csv:101221856 489.189