Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02577 ATGCTGAGCATTCTTGTGCGCCAGTTGATTTCAGGAACTGTCCTAAGGTTGATTCCCATAAATGGAAGCGAACTAGATTTTGAAGATGATGGAATTGGAAGGCTTAATGGGTCCGAACAGGATAAACCAACCTCATTTGCAAAGACACTGACTCAGTCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACTATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCCGTTCAAACCATTCTTGCTAAGGATGTTCATGGGGAGACATGGAAATTCAGGCACATTTATAGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAACCATAAGAAGCTCGTTGCAGGTGATTCCATTGTTTTCCTAAGGGCAGAAAACGGAGATCTCTGCGTTGGGATTAGACGGGCCAAGAGAGGAATTGGGGATGGACCGGAGTCATCCTGTGGCTGGAATCCAGCAGGTGGTAACTGTGCTGTTTCGTATGGGGCATTCTCTGCGTTTTTGAGGGAAGATGACAACAGATTGACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTACTGAAGCTGCTAAACTTGCTTCAAATGGACAACCCTTTGAAATAATATTCTATCCAAGAGCTAGTACTCCTGAATTCTGTGTCAAGGCAGCACTGGTGAAAGCAGCATTACAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGTTGGTTCATGGGTACCATCAATTCCGTTCAGGTTTCGGACCCACTGCGCTGGCCTGAATCACCATGGAGGCTTCTTCAGGTTACTTGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTATCAAGCATGTCTCCAATTCACCTTGCCCCTTTCTCACCACCAAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCTTGATAATCAACCTCCTGTGCCATCGTTTTCTAGTTATCTCCATGGGACTGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATGTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGTAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGATGGCGTGAAGACTCCTCAGCTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCTCAAAGCTTCTCTGGCGATACCGTTTCTCCAGTAGGTACTGGAAATAGTTCGTCAGATGGAAATGGAGACAAAATGACAAACCTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCTGCTGGCGAAAATTTCCAGTGGTACAAGGACAATTGCCAAGAAATCGACCCAAACTTGGATATCGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGACGCACTCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAACCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAACATGTCGGTGACGAACAATTCAGTGACTTCATCAAGACAGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 1875 44.96 MLSILVRQLISGTVLRLIPINGSELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVSYGAFSAFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVTEAAKLASNGQPFEIIFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVSDPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSSMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHVSKLQSGLFSIGYRSLDPAAGSTRLSGNVMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVGTGNSSSDGNGDKMTNLSDGSGSALHQQGLPEGSAGENFQWYKDNCQEIDPNLDIGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA* 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22760384 22764345 + CsaV3_6G039630.1 Csa06g02577 534204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02577 624 ProSiteProfiles PB1 domain profile. 538 618 IPR000270 GO:0005515
Csa06g02577 624 MobiDBLite consensus disorder prediction 476 513 - -
Csa06g02577 624 MobiDBLite consensus disorder prediction 476 511 - -
Csa06g02577 624 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 615 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa06g02577 624 Gene3D - 250 325 - -
Csa06g02577 624 CDD B3_DNA 45 146 IPR003340 GO:0003677
Csa06g02577 624 Gene3D - 538 622 - -
Csa06g02577 624 Pfam Auxin response factor 213 296 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa06g02577 624 Gene3D - 44 148 IPR015300 -
Csa06g02577 624 SMART B3_2 46 148 IPR003340 GO:0003677
Csa06g02577 624 Pfam B3 DNA binding domain 46 147 IPR003340 GO:0003677
Csa06g02577 624 ProSiteProfiles B3 DNA-binding domain profile. 46 148 IPR003340 GO:0003677
Csa06g02577 624 PANTHER AUXIN RESPONSE FACTOR 15 615 - -
Csa06g02577 624 SUPERFAMILY DNA-binding pseudobarrel domain 40 152 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02577 Csa-Chr6:22760384 Csa02g00687 Csa-Chr2:5531533 4.01E-57 dispersed
Csa06g01198 Csa-Chr6:10156022 Csa06g02577 Csa-Chr6:22760384 0 transposed
Csa06g02262 Csa-Chr6:20280542 Csa06g02577 Csa-Chr6:22760384 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32088 PF02362 B3 1.30E-21 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02577 - - csv:101217039 1247.26