Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02580 ATGGCGGAACTCGGTCACCAAAATGGCGTCGAGTTTTGCATCGGCGGCCGTAATAACATCAATAACGATCCGTTGAATTGGGGAGCGGCAGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGAGGATGGTAGAGGAGTACCGGCGGCCGGTGGTGAAACTTGGAGGAGAGACTCTGACGATATCTCAGGTGGCTGCGATCGCCTCCAGGGATTCCGGCGTGGTGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGGGTTGAGGCGAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGAACGGATAGCTACGGCGTCACGACCGGCTTTGGTGCCACCTCCCATCGCCGGACTAAAGAGGGCGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAATGCGGGAGTATTTGGAAATGGCACTGAATCGAGTCACACTTTACCTCATTTAGCAACAAGAGCAGCCATGTTAGTTAGGATCAACACCCTCCTTCAAGGCTACTCGGGTATTAGGTTTGAAATCTTGGAAGCTATAACCAAACTTCTCAACCACAACGTCACTCCATGTTTGCCTCTTAGAGGAACGATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGGTTGCTTACTGGTCGATCAAATTCGAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCAAACAAGCTAGTATTCCCTCTGGGTTCTTTGAGTTGCAACCTAAAGAAGGATTGGCTCTTGTCAATGGAACTGCTGTTGGTTCAGGGTTAGCCTCTATTGTGTTATTTGAGGCAAACATTTTGGCAGTTTTAGCTGAAATTATGTCTGCTATTTTTGCTGAGGTCATGCAAGGTAAGCCTGAATTTACCGATCATTTAACTCATAAATTGAAGCATCATCCTGGTCAGATTGAGGCAGCTGCAATCATGGAACACATTTTAGATGGAAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTGGGTCCGTTGATTGAAGTTATTCGATTCTCTACAAAATCTATTGAGAGGGAGATTAATTCAGTCAACGACAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTACACGGAGGTAACTTCCAAGGAACACCAATTGGAGTCTCGATGGATAACACTCGCTTGGCCATTGCTTCAATTGGTAAGCTCATCTTTGCTCAATTTTCTGAGCTTGTTAATGATTTTTACAACAATGGCTTGCCTTCAAATCTCTCTGCAAGTAGAAACCCAAGCTTAGATTATGGACTCAAAGGTACCGAAATTGCTATGGCTTCTTATTGCTCCGAGCTTCAATATTTGGCAAATCCGGTAACAAGTCATGTCCAAAGTGCTGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCAATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTAGCACTTTGTCAAGCAATTGACTTGAGACATTTGGAAGAAAATCTAAAGAGCACAGTAAAGAACACAGTAAGCCAAGTGGCCAAGAAGATCCTTACCACTGGTGCTAATGGAGCTCTTCACCCGTCTAGATTTTGTGAGAAGGATTTACTCAAGGTTGTTGATAGAGAATACATATTTGCTTACATCGATGACCCATGCAGTGCCACTTATCCATTAATGCAAAAGTTAAGACAAGTTCTTGTGGAGCATGCACTTTCAAATGGAGAAGATGAGAAGAACGCCAACAGTTCAATCTTTCAAAAGATTCATGTTTTCGAAGAGGAACTAAAAGTTGTTTTACCTAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTCTACGGTTCAAAATCAAATTAAGAAATGTAGATCATATCCACTCTACAAGTTCATAAGAAAAGAGTTAGGAACTGAGTTGCTTACAGGAGAAAAGGCAAAATCTCCCGGAGAAGTGTGCGAAAAAGTGTTCATAGCTTTATGTCAAGGAAAGATGATCGATCCGATCTTAGAGTGTTTAAAGGAATGGAATGGTGCTCCAATTCCTATTTGCTAA 2145 43.22 MAELGHQNGVEFCIGGRNNINNDPLNWGAAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIASRDSGVVVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGVFGNGTESSHTLPHLATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRSNSKAIGPNGESLDAKEAFKQASIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEIMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGLKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKILTTGANGALHPSRFCEKDLLKVVDREYIFAYIDDPCSATYPLMQKLRQVLVEHALSNGEDEKNANSSIFQKIHVFEEELKVVLPKEVESARFAYENGNSTVQNQIKKCRSYPLYKFIRKELGTELLTGEKAKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22800389 22803793 + CsaV3_6G039660.1 Csa06g02580 534207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02580 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Csa06g02580 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g02580 714 Pfam Aromatic amino acid lyase 61 536 IPR001106 -
Csa06g02580 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Csa06g02580 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Csa06g02580 714 PANTHER HISTIDINE AMMONIA-LYASE 17 714 IPR001106 -
Csa06g02580 714 Gene3D - 527 648 IPR023144 -
Csa06g02580 714 Gene3D - 14 260 IPR024083 -
Csa06g02580 714 CDD PAL-HAL 59 524 IPR001106 -
Csa06g02580 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 714 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02580 Csa-Chr6:22800389 Csa06g02582 Csa-Chr6:22815013 0 dispersed
Csa06g02580 Csa-Chr6:22800389 Csa06g02581 Csa-Chr6:22809979 0 tandem
Csa01g02959 Csa-Chr1:25961521 Csa06g02580 Csa-Chr6:22800389 0 transposed
Csa06g01208 Csa-Chr6:10244020 Csa06g02580 Csa-Chr6:22800389 0 wgd
Csa06g02269 Csa-Chr6:20347169 Csa06g02580 Csa-Chr6:22800389 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02580 K10775 - csv:101217907 1400.96