Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02581 ATGGCACCCATTGATCAGACAAATGACGACAGCAGCTTTTGCACCAATACTACTCATCCAGACCCACTCAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTCCAGGAGTATCGAAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAGGTGGCTGCTATTGCTACTCGGGATACTGATGTTATTGTTGAGCTTTCTGAATCTGCTAGAGCTGGTGTTAAGGCTAGCAGTGATTGGGTTATGGAGAGTATGAATAAAGGGACCGATAGTTATGGTGTTACTACTGGATTTGGTGCTACTTCTCATAGAAGAACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAGTCTGATCATACTTTGCCTCATTCTGCTACGAGAGCGGCCATGTTGGTGAGAATCAACACTCTACTTCAGGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCAAACTCTTGAATAATAATATTACTCCTTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGTCGTCCAAATTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAAGCTTTCCAACAAGCTGGTATTCCATCTGGGTTTTTTGAGTTGCAGCCAAAGGAAGGGTTGGCACTTGTTAATGGCACTGCCGTTGGTTCTGGGTTGGCTTCTATCGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATCTTTGCTGAAGTTATGCAAGGCAAGCCAGAATTTACTGATCATTTGACCCATAAGTTGAAGCATCATCCAGGGCAGATTGAAGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAACAGCTAAGAAGTTGCATGAAATGGATCCTCTTCAAAAGCCCAAACAAGATCGCTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCTACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGGAATAAGGCTTTGCATGGAGGCAACTTCCAAGGAACCCCAATAGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAGCTTCTTTTTGCTCAATTTTCAGAACTTGTCAATGATTTCTATAATAATGGGCTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCATATTGCTCTGAGCTTCAATACTTAGCAAATCCCGTTACTAGTCATGTCCAAAGTGCCGAGCAACATAATCAAGATGTCAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGCTGAGGCCGTTGACATTCTAAAGCTCATGTCGTCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAAGAAAATTTGAAGAATGTAGTGAAGAGCACGGTAAGTCAAGTGGCCAAGAAAGTTCTCACCACAGGTGTTAACGGTGCACTTCACCCATCAAGATTTTGTGAAAAAGATTTACTGAAAGTGGTTGACAGAGAATACACCTTTGCCTATGTCGATGATGCATGCAGTGCCACTTATCCATTGATGCAAAAGCTAAGACAAGTTCTTGTTGAACATGCTTTGGAAAATGGTGAAGATGAAAAGAATACAAACACTTCCATTTTTCAAAAGATTGGAGCTTTCGAGGAGGAATTGAAAGCCATCTTACCAAAAGAAGTAGAAAATGCAAGATTGTCCTATGAAAATGGAACGTCCACCATTGAAAACCAAATTAAAGAATGTAGATCTTATCCATTGTACAAGTTCGTGAGGGAGGAGTTGAGAACTGGATTGTTGACCGGAGAAAAGGTGATATCTCCAGGAGAAGAGTGTGAAAAGGTATTCACAGCTCTTTGTCAAGGAAAAATGATCGATCCAATTTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATCCCCATCTGCTAG 2139 41.84 MAPIDQTNDDSSFCTNTTHPDPLNWGLAADSLKGSHLDEVKRMVQEYRRPLVKLGGETLTISQVAAIATRDTDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNVVKSTVSQVAKKVLTTGVNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALENGEDEKNTNTSIFQKIGAFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELRTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22809979 22812478 + CsaV3_6G039670.1 Csa06g02581 534208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02581 712 Pfam Aromatic amino acid lyase 59 532 IPR001106 -
Csa06g02581 712 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g02581 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Csa06g02581 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 702 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g02581 712 CDD PAL-HAL 57 522 IPR001106 -
Csa06g02581 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 712 - -
Csa06g02581 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Csa06g02581 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Csa06g02581 712 Gene3D - 525 646 IPR023144 -
Csa06g02581 712 PANTHER HISTIDINE AMMONIA-LYASE 14 712 IPR001106 -
Csa06g02581 712 Gene3D - 12 258 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01208 Csa-Chr6:10244020 Csa06g02581 Csa-Chr6:22809979 0 dispersed
Csa06g02269 Csa-Chr6:20347169 Csa06g02581 Csa-Chr6:22809979 0 dispersed
Csa06g02581 Csa-Chr6:22809979 Csa06g02583 Csa-Chr6:22819209 0 dispersed
Csa06g02580 Csa-Chr6:22800389 Csa06g02581 Csa-Chr6:22809979 0 tandem
Csa06g02581 Csa-Chr6:22809979 Csa06g02582 Csa-Chr6:22815013 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02581 K10775 - csv:101218144 1404.81