Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02582 ATGGCTTCTTTCCAAAACATTGAAGACAACTTGTGCCATACCCATAGTGATCCACTCAATTGGGGGGTGGCTGCCGAGTCTCTCAAGGGAAGTCATCTTGATGAGGTTAAGCGCATGGTGGAGGAGTACAGAAGGCCCCTTGTTAAGCTTGGAGGTGAAACTCTTACTATTTCTCAGGTGGCTGCCATTGCTACTCGAGATTCTGATGTTATTGTTGAGCTTTCTGAGTCCGCTAGAGTCGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGCATGAATAAAGGCACTGATAGTTATGGTGTTACTACTGGATTTGGTGCTACTTCTCATAGAAGGACCAAAGAAGGTGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAATGCGGGAATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCCCATTCAGCTACGAGAGCAGCCATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCAAACTCTTGAACAATAATATCACTCCTTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGCCGTCCAAATTCTAAAGCTGTTGGTCCAAACGGAGAAAGTTTTGATGCAAAGGAGGCTTTCCAACAAGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAGCCAAAGGAAGGGTTGGCACTTGTTAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCTATCGTTCTCTTTGAAGCAAATATTTTGGCTGTTTTATCTGAAATTTTGTCCGCCATCTTTGCTGAAGTTATGCAAGGCAAACCCGAATTTACTGATCATTTGACCCATAAGTTGAAGCATCATCCGGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGACCCTCTACAAAAGCCTAAACAAGATCGCTATGCCCTTCGCACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCTACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAACGATAACCCTTTAATTGATGTTTCAAGGAACAAGGCTTTACATGGGGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTAGCTATTGCTTCAATTGGAAAGCTTCTTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTATAATAATGGGTTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCATATTGCTCTGAGCTCCAATACCTAGCAAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGCTGAGGCAATTGACATTTTGAAGCTCATGTCTTCCACATTTATGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATCTAGAAGAGAACTTGAAACACACAGTTAAAAATACAGTAAGTCAAGTGGTGAAGAAAGTCCTCACCACTAACTCAAATGGCACACTCCATCCATCAAGATTTTGCGAGAAGGATTTACTCAAAGTGGTTGATAGGGAATACACCTTTGCTTATATTGACGATCCATGCAGTGCTACTTATCCATTGATGCAAAAGTTAAGGCAAGTTATTGTCGAACATGCTTTAAACAATGGAGAGGGTGAAAAAGAACTAGCTACTTCAATCTTTCAAAAAATTGGAACATTTGAAGAGGAGCTGAAGGCTGTTCTACCCAAAGAAGTGGAAAACGTAAGATTGGCTTACGAAAATGGAGATGCTACTATTGAGAATCAAATTAAGGAATGCAGATCTTACCCACTATATAAGTTTGTGAGAGAAGCGTTGGGCACTAATTTGCTAACTGGAGAGAAAGTTATATCTCCAGGAGAAGAGTGTGAAAAAGTTTTTACTGCTTTGTGTCAAGGAAAGATGATTGACCCAATTTTGGAATGCTTAAAGGAATGGGATGGCGCTCCAATTCCTATATGCTAA 2127 41.51 MASFQNIEDNLCHTHSDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVIVELSESARVGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESFDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFMVALCQAIDLRHLEENLKHTVKNTVSQVVKKVLTTNSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEGEKELATSIFQKIGTFEEELKAVLPKEVENVRLAYENGDATIENQIKECRSYPLYKFVREALGTNLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWDGAPIPIC* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22815013 22817701 + CsaV3_6G039680.1 Csa06g02582 534209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02582 708 Pfam Aromatic amino acid lyase 55 528 IPR001106 -
Csa06g02582 708 Gene3D - 521 642 IPR023144 -
Csa06g02582 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 13 708 - -
Csa06g02582 708 CDD PAL-HAL 53 518 IPR001106 -
Csa06g02582 708 PANTHER HISTIDINE AMMONIA-LYASE 13 708 IPR001106 -
Csa06g02582 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g02582 708 Gene3D Fumarase/aspartase (Central domain) 255 702 - -
Csa06g02582 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841
Csa06g02582 708 Gene3D - 8 254 IPR024083 -
Csa06g02582 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02580 Csa-Chr6:22800389 Csa06g02582 Csa-Chr6:22815013 0 dispersed
Csa06g02582 Csa-Chr6:22815013 Csa06g02584 Csa-Chr6:22823980 0 dispersed
Csa06g02581 Csa-Chr6:22809979 Csa06g02582 Csa-Chr6:22815013 0 tandem
Csa06g02582 Csa-Chr6:22815013 Csa06g02583 Csa-Chr6:22819209 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02582 K10775 - csv:101218382 1399.03