Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02583 ATGGCATTTGCTCACTTCCAACAAAAGAACGGTTCAGTGGAGAGTTTGTGCATTGGCTCTAACGATCCACTGAATTGGGGTGTGGCTGCTGAGTCTCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTATCGGAGGCCCCTTGTCAAGCTTGGTGGTGAGACTCTTACCATTTCTCAGGTGGCTGCTATTGCTACTCGGGATACTGATGTTATTGTTGAGCTTTCTGAATCTTCTAGAGCTGGTGTTAAGGCTAGCAGTGATTGGGTCATGGAGAGCATGAATAAAGGAACTGATAGTTATGGTGTTACTACTGGATTTGGTGCTACTTCTCATAGAAGGACCAAGCAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCGGGAATTTTTGGAAGTGGAGCTGAGTCTGATCATACTTTGCCTCATTCAGCTACGAGAGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACAATAATATCACTCCTTGCTTGCCTCTTCGTGGAACCATTACTGCTTCGGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGGCGACCCAACTCCAAGGCCATTGGACCAAATGGAGAACGTATTACTGCCAAGGAAGCTTTCCAACAAGCTGATATTCCTTCTGGGTTCTTTGAATTGCAACCTAAGGAAGGTCTTGCTCTTGTTAATGGTACTGCTGTTGGTTCAGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCAGAGATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTTACCGATCATTTAACTCATAAGTTGAAGCACCACCCTGGTCAAATTGAGGCGGCAGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAACAGCCAAGAAATTGCATGAAATTGATCCCCTCCAAAAGCCTAAACAAGATCGATATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTAATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCGGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTTCAAGGAACACCCATTGGAGTTTCTATGGATAACACTCGATTGGCCATTGCATCTATAGGAAAGCTCATGTTTGCTCAATTTTCGGAACTCGTCAATGATTTCTATAATAACGGTTTGCCATCTAATCTTTCTGCTAGTAGAAATCCGAGCTTGGATTATGGATTTAAAGGAGCTGAAATTGCCATGGCTTCATATTGCTCTGAGCTTCAATACCTTGCAAATCCAGTTACAAGTCATGTTCAAAGTGCTGAGCAACACAATCAAGATGTTAACTCTCTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCTATTGATATTCTGAAACTCATGTCATCAACATTTTTAGTTGCTCTATGCCAAGCAATTGACTTGAGGCATCTGGAGGAAAACTTGAAGAGCACTGTGAAAACCACTGTTAGCCAAATAGCCAAGAAAGTATTAACCACATCCTCTAATGGGACACTTCACCCCTCAAGATTCTGTGAGAAAGATCTACTCAAAGTCGTCGATAGAGAGTACACATTTTCTTATATCGATGATCCATGCAGTGCTACTTACCCATTGAGTCAAAAGTTAAGACAAGTTCTCGTTGAACATGCACTTGCAAATGGTGATAATGAAAAGACGGTAGACACTTCAATCTTCCAAAAGATTGCTTCTTTCGAGGAGGAACTGAAGGCAGTATTACCAAAAGAAGTTGAAAATTCAAGGTTAGCATATGAAAGCGGAAGTTCTAAAATTGAAAATCAAATCAAGAATTGTAGATCGTATCCATTGTATAGATTTGTGCGAGAAGAGTTGGAAACAAAAATGCTAACGGGAGAAAAAGTGATATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACAGCTTTGTGTCAAGGCAAGATGATAGACTCGATCTTAGAGTGCTTGAAAGAGTGGAACGGTGCTCCAATTCCAATTTGCTAA 2142 41.22 MAFAHFQQKNGSVESLCIGSNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDTDVIVELSESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGERITAKEAFQQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKTTVSQIAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFSYIDDPCSATYPLSQKLRQVLVEHALANGDNEKTVDTSIFQKIASFEEELKAVLPKEVENSRLAYESGSSKIENQIKNCRSYPLYRFVREELETKMLTGEKVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22819209 22821784 - CsaV3_6G039690.1 Csa06g02583 534210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02583 713 CDD PAL-HAL 58 523 IPR001106 -
Csa06g02583 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 713 - -
Csa06g02583 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Csa06g02583 713 Gene3D - 526 647 IPR023144 -
Csa06g02583 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g02583 713 PANTHER HISTIDINE AMMONIA-LYASE 19 713 IPR001106 -
Csa06g02583 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824
Csa06g02583 713 Gene3D - 14 259 IPR024083 -
Csa06g02583 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Csa06g02583 713 Pfam Aromatic amino acid lyase 60 532 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02581 Csa-Chr6:22809979 Csa06g02583 Csa-Chr6:22819209 0 dispersed
Csa06g02583 Csa-Chr6:22819209 Csa06g02585 Csa-Chr6:22827837 0 dispersed
Csa06g02582 Csa-Chr6:22815013 Csa06g02583 Csa-Chr6:22819209 0 tandem
Csa06g02583 Csa-Chr6:22819209 Csa06g02584 Csa-Chr6:22823980 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02583 K10775 - csv:101218617 1400.19