Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02584 ATGGCACCTGCCCAGTTGGAACAATTTGCTCACCAAAATGGCTCGATGGAGAGCTTTTGCACAAGCCACGTTGTCGATCCACTCAATTGGGGTGTGGCAGCTGAGGCTCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGGATGGTGGATGAGTATAGAAGGCCTGTTGTAAAGCTTGGGGGTGAGACTCTCACTATTTCTCAGGTGGCTGCTATTGCCACTCGTGATAATGATGTAGTTGTGAAATTGGCTGAGTCTGCCAGAGCGGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACAAAACAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTTTTAAATGCTGGAATTTTTGGAAATGGAGCTGAGTCGAATCATACTTTGCCTCATTCAGCTACGAGGGCAGCCATGTTAGTGAGGATCAATACTTTGCTTCAAGGTTACTCGGGCATTCGATTTGAGATTTTGGAAGCTATTACTAATCTTCTCAATGAAAACGTTACTCCATGTTTGCCACTACGAGGAACAATTACGGCATCGGGGGATCTTGTCCCTTTATCGTATATTGCTGGGCTACTTACGGGTCGTCCTAATTCCAAGGCCATTGGGCCTAATGGGGAAACTCTTGACGCTGAGGCTGCCTTTAAACAAGCTGGTATTCCTTCTAGCTTTTTCGAGTTGCAGCCTAAAGAAGGTCTTGCTCTTGTTAATGGCACGGCTGTAGGTTCTGGGTTAGCTTCTATTGTCCTATTTGAGGCAAATATTCTAGCTGTTCTATCAGAAATTCTTTCTGCTATCTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACTGATCATTTGACTCACAAGTTGAAACATCACCCTGGTCAAATTGAAGCCGCCGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAGCAGCCAAGAAACTACATGAAATTGATCCTCTCCAAAAGCCTAAACAAGATCGTTATGCTCTTAGAACTTCACCACAATGGCTTGGGCCATTGATTGAAGTGATTCGATTTTCCACCAAATCTATTGAGCGAGAGATTAACTCAGTCAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCACGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCCATGGATAACACTCGTTTGGCCATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGACTTCTACAACAATGGTTTACCTTCTAATCTTTCTGCCAGTAGAAATCCTAGCTTGGATTATGGGTTTAAAGGAGCTGAAATTGCAATGGCTTCATACTGCTCTGAACTTCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCAAGAAAAACTGCAGAAGCCATCGATATCTTGAAACTCATGTCATCCACATTTTTGGTTGCACTCTGCCAAGCAATTGACTTGAGGCATCTGGAGGAAAACTTGAAGAGCACGGTTAAAAGTGTAGTGAGTCAAGTAGCGAAAAAGGTATTAACCACATCCTCCATTGGCACACTACACCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTCGTTGACAGAGAATACACATTTGCATACATTGATGATCCATGTAGTGCTACTTATCCATTGATGCAAAAGTTGAGACAAGTTCTAGTTGACCATGCCCTCACCAATGGCGAAAATGAAAAAAACATGAACACGTCCATCTTCCAAAAGATTACTGCTTTTGAAGAAGAACTAAAGGTAGCTTTACCGAAGGAAGTTGAAAATACAAGGTTGGCATATGAGAGCGGAAATTCTAAAGTTGCAAATCAAATAAAGGATTGTCGATCTTATCCATTATATAAATTTGTGAGAGAAGACTTGGGAGCAAAACTTCTAACAGGAGAAAGAGTGATATCTCCAGGAGAAGAATGCGAGAAGGTATTCACAGCTTTGTGTCAAGGAAAGATGATCGACTCTATTTTGGAGTGCTTAAAAGAGTGGAACGGGGCTCCCATTCCTATATGTTAG 2154 41.83 MAPAQLEQFAHQNGSMESFCTSHVVDPLNWGVAAEALKGSHLDEVKRMVDEYRRPVVKLGGETLTISQVAAIATRDNDVVVKLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITNLLNENVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGETLDAEAAFKQAGIPSSFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSVVSQVAKKVLTTSSIGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVDHALTNGENEKNMNTSIFQKITAFEEELKVALPKEVENTRLAYESGNSKVANQIKDCRSYPLYKFVREDLGAKLLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22823980 22826542 - CsaV3_6G039700.1 Csa06g02584 534211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02584 717 CDD PAL-HAL 62 527 IPR001106 -
Csa06g02584 717 Gene3D - 17 263 IPR024083 -
Csa06g02584 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
Csa06g02584 717 PANTHER HISTIDINE AMMONIA-LYASE 22 717 IPR001106 -
Csa06g02584 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Csa06g02584 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 22 717 - -
Csa06g02584 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g02584 717 Pfam Aromatic amino acid lyase 64 542 IPR001106 -
Csa06g02584 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Csa06g02584 717 Gene3D - 530 651 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00232 Csa-Chr4:1387653 Csa06g02584 Csa-Chr6:22823980 0 dispersed
Csa04g00233 Csa-Chr4:1392661 Csa06g02584 Csa-Chr6:22823980 0 dispersed
Csa06g02582 Csa-Chr6:22815013 Csa06g02584 Csa-Chr6:22823980 0 dispersed
Csa06g02584 Csa-Chr6:22823980 Csa06g02586 Csa-Chr6:22831929 0 dispersed
Csa06g02583 Csa-Chr6:22819209 Csa06g02584 Csa-Chr6:22823980 0 tandem
Csa06g02584 Csa-Chr6:22823980 Csa06g02585 Csa-Chr6:22827837 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02584 K10775 - csv:101222092 1400.19