Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02585 ATGGCACCAATTGAGACCACATGCAAGAGCTTCACTCATGATCCTCTCAATTGGGGTGTGGCTGCGGAGTCCCTCAAGGGGAGCCATCTAGATGAGGTCAAACGCATGGTAGAGGAGTACCGAAGGCCCCTTGTGAAGCTTGGTGGTGAAACTCTCACCATTTCTCAAGTAGCTGCTATTGCTACTCGAGATTTTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCAGGTGTGAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAAAAAAGGCACTGATAGTTACGGAGTTACTACTGGTTTTGGTGCTACCTCTCACAGAAGGACAAAAAATGGTGGGGCTCTTCAGAAGGAGCTTATTCGATTCTTGAATGCTGGTATCTTTGGAAATGGTGCTGAGTCATGTCATACTTTGTCTCGTTCGGCTACCAGAGCAGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGTTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGAACCATAACGTCACTCCATGTTTGCCTCTTCGTGGCACAATTACTGCTTCTGGTGATCTTGTTCCACTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCAAATTCTAAAGCCATTGGTCCAAATGAAGAAAGTCTTGATGCAAACGAGGCTTTTCAACGAGCTGGTATTCCTTCTGGATTCTTTGAGTTGCAACCAAAGGAAGGTCTTGCTCTTGTCAATGGTACCGCTGTTGGTTCTGGATTGGCTTCTATCGTTCTCTTTGAAGCAAATATTTTAGCTGTCTTATCTGAGATTTTGTCAGCTATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACTGACCATTTAACCCATAAGTTGAAGCATCATCCTGGACAGATTGAAGCAGCTGCAATCATGGAATACATTTTAGATGGGAGTTCTTACATGAAAACGGCCAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTACGCTCTTAGAACTTCACCGCAATGGTTGGGTCCATTGATTGAAGTTATTAGGTTCTCAACAAAGTCTATAGAGCGTGAGATTAATTCAGTTAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCATGGAGGTAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCTTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAACTTGTTAATGACTTCTACAACAACGGTTTACCTTCTAATCTTTCTGCAAGTAGAAACCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATATTGCTCTGAGCTTCAATATCTTGCAAATCCGGTCACAAGTCATGTCCAAAGTGCCGAACAACACAACCAAGACGTCAACTCTCTTGGCTTGATTTCTTCAAGAAAAACAGCCGAAGCCATTGATATTTTGAAACTCATGTCTTCCACCTTTTTAGTTGCTCTTTGCCAAGCAATTGATTTAAGGCATTTGGAGGAAAATCTCAAGAGCACCGTTAAAACTATTGTAAGCCAAGTAGCGAAGAAAGTTTTGACCACAACCTCTAATGGTGCACTTCACCCATCGAGATTTTGTGAGAAAGACTTATTAAAGGTTGTTGACAGAGAGTATACTTTTGCCTATATAGATGATCCATGCAGCGCCATTTACCCATTAATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCACGCACTTGCAAATGGCGATGATGAAAAGAACACAAGCACTTCAATCTTCCAAAAGATTGCTACTTTTGAAGAGGAACTTAAGGTAGTTTTACCAAAGGCAGTTGAAAACACAAGGCTAGCATACGAGAGTGGAGAAGCACCCATTAAGAACCAAATTGAAGAATGTAGATCATACCCGTTATATCAATTTGTGAGAAAAGAGTTGGGAACAAATTTGCTAACAGGTGAAAAAATGATATCTCCAGGAGAAGAATGTGAAAAGGTATTCACGGCTTTGTGTCAAGGAAAGATGATTGATTCTATCTTAGAATGTTTGAAGGAATGGAACGGAGCTCCCATTCCCATATGTTAG 2118 41.55 MAPIETTCKSFTHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSESARAGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGAESCHTLSRSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNEESLDANEAFQRAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKTIVSQVAKKVLTTTSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSAIYPLMQKLRQVLVEHALANGDDEKNTSTSIFQKIATFEEELKVVLPKAVENTRLAYESGEAPIKNQIEECRSYPLYQFVRKELGTNLLTGEKMISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22827837 22830468 - CsaV3_6G039710.1 Csa06g02585 534212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02585 705 CDD PAL-HAL 50 515 IPR001106 -
Csa06g02585 705 PANTHER HISTIDINE AMMONIA-LYASE 5 705 IPR001106 -
Csa06g02585 705 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g02585 705 Pfam Aromatic amino acid lyase 52 528 IPR001106 -
Csa06g02585 705 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 5 705 - -
Csa06g02585 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841
Csa06g02585 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824
Csa06g02585 705 Gene3D - 5 251 IPR024083 -
Csa06g02585 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Csa06g02585 705 Gene3D - 518 639 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02583 Csa-Chr6:22819209 Csa06g02585 Csa-Chr6:22827837 0 dispersed
Csa06g02584 Csa-Chr6:22823980 Csa06g02585 Csa-Chr6:22827837 0 tandem
Csa06g02585 Csa-Chr6:22827837 Csa06g02586 Csa-Chr6:22831929 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02585 K10775 - csv:101218856 1388.24