Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02614 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCCGCTTGCCGCTCCGTGCCGCTGCCACCACCTCCGCCGCTCTCAACCTCACTCTCCCTGGCCAGCATCCTAGCCCTGAATTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATCTCAGAGAAAGATGAATCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGACCGAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCTATAGGATTCGGCCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATAGTCACGGACGATTCGGACGACGATGCAGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTGTGGATCGTCTTCCCTGCCAATATGCTCATCAAACTCTCGCAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACGTTGCAATACATAAGTAATGTCATCATCCACAACATCCATATCCACCATTGTCATCCATCAGGTAACACCATGGTTCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGACATATGGATTGATCATTGTTCATTGTCTCATTGCAAAGATGGATTGATCGATGCGGTGATGGGATCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGTTGTTGGGTCACAGCGACAACTACTGGCCGGATTCCGGTATGCAGGTAACAATAGCATTCAACCACTTCGGAGAAAAGCTAGTGCAAAGGATGCCACGCTGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGCAACCCCACCATCAACAGCCAAGGCAACCGTTACACCGCCCCATATGACCGCAACGCCAAGGAGGTCACCAAGCGAGTCGAAACTTCCGAATCCGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGAGACATCCTTGTGAACGGCGCCTTCTTCGTCACTTCCGGTCAAGGGCTTGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAGCCGAAGTCCGCGGCGCTGATTGATCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGATAATAATTTGGGGATGTGGACGACTGGCCCTAATGGTAATGGCGGTGGGTTTGGGCTTGGGTCTGGTATGGACTATACTGACGACATGTCGGAGAGTTGTTTTGTAAGGGTGTTTTCTGTTTTGTTGTGGTCTTTTTGTTGGGCACTGGTCGTGGTGGTTGCGTTTGTGCTATGA 1443 52.88 MLATTCIVLLALLLPSRLPLRAAATTSAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLQISEKDESSSCYTGNPIDDCWKCDRNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDNYWPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGNGGGFGLGSGMDYTDDMSESCFVRVFSVLLWSFCWALVVVVAFVL* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23007604 23011325 + CsaV3_6G040000.1 Csa06g02614 534241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02614 480 Pfam Pectate lyase 161 340 IPR002022 -
Csa06g02614 480 PANTHER PECTATE LYASE 18-RELATED 5 437 IPR045032 GO:0030570
Csa06g02614 480 Gene3D - 76 418 IPR012334 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 99 116 IPR018082 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 123 148 IPR018082 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 159 175 IPR018082 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 223 244 IPR018082 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 367 391 IPR018082 -
Csa06g02614 480 PRINTS Pollen allergen Amb family signature 396 419 IPR018082 -
Csa06g02614 480 PANTHER PECTATE LYASE 12-RELATED 5 437 - -
Csa06g02614 480 SUPERFAMILY Pectin lyase-like 72 399 IPR011050 -
Csa06g02614 480 SMART amb_all 151 348 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02772 Csa-Chr5:28428196 Csa06g02614 Csa-Chr6:23007604 0 dispersed
Csa06g02614 Csa-Chr6:23007604 Csa02g01684 Csa-Chr2:16049973 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02614 K01728 - csv:101203012 943.34