Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02620 ATGGCCACCATTTTAAAATCTTTAATTCAATTCCCAACATTCAGCATCAGGACTGGGCAAAGAAGACGATCGCAGATGTCGAATTTCGCCGTCCAAGTTCTATTGGGCCGATGGTTCACCGTCTTCGCTTCTTTACTCATCATGTCCGTTTCCGGCGCCACCTACATGTTCGCACTTTACTCCTCCGACATCAAATCCTCCTTGAATTACGATCAGACCACACTCAACCTCGTCGGCTTCTTTAAGGATCTGGGTTCCAACGTCGGAGTCTTTTCCGGTCTCATTAATGAAATTACTCCGCCTTGGGTTGTTCTCTTCATCGGTGGGGTAATGAATTTCTTTGGCTATTTCATGATTTGGCTGTCTGTCACCCACCGTATCCCCAAACCCAAATTGCCTGCAATGTGTTTGTTTACATTCCTAGGTGCAAATTCTCAGACATTTGCCAATACAGGGGCTTTGATACCTTCTGTGAAGAATTTCCCTCAGAATCGAGGTTATGTATTGGGTTTATTGAAAGGGTTTGTTGGATTAAGTGGGGCAATTTTGACTCAGATTTATCATGCTTTTTATGGGGATGATTCGAAGGATTTTATATTGCTTATTGCTTGGCTGCCTACTGCTGTTTCTTTACTGCTTCTTCGGATTGTTAGAGTAGTGGAAGCGAACCCCACATTCAAATCCAATGATCTAAAAAATTTCTATTCTATGCTCTACATTTCCCTTGGTCTTGCTGGCTTCCTCATGATTTTGATTATTATCCAAAATGAGCTCATGTTTACTAGAATTCAGTATTTGGGTTGTGTGTTTGTTCTTCTAACGTTTCTTTTTCTTCCCCTTGTTGTTATTATAAGAGAAGAATTCGGCATTAGGAAAAGGAAATTGCAAGGTGTGGATGTTACTTCTTGGCTTCCGGTTCCATCAGACGAATCTCCAGATGAATTACCATTGCCTAGAACTTCAAGTTTTCCAACGACTGATACAGCTTTAGCCAACCCAAGTTCTTGCTTCGAAAATGTGTTCAGACCGCCGGAAAGAGGAGAGGACTACACCATTTTACAAGCAATCTTCAGTGTAGATATGTTAATTCTGTTTTTTGTCACAATTTGTGGGGCTGGTGGGACTTTGACTGCAATGGACAACCTGGGTCAGATAGGCAGCTCCCTTGGCTACTCAACTCATACCATTTCTACTTTCACTTCTCTAGTGAGTATATGGGGCTTTCTCGGTCGAGCATTTTCGGGTTATGCTTCTGAATTCTTATGGACGAAGTATAACTTCTCTCGCCCTTTGTTCCTCACTCTTGTCCTTCTTCTCTCTTGCTTTGGCCATCTTCTAATTGCCTCTGGACTCCCAACCTCCGTTTATTTTGCTTCTGTGATAATTGGATTTTGCTTTGGAGCACAATGGCCACTGATTTTCGCCATTGTTTCTGAATTATTTGGCTTGAAATACTATGCAACTTTATATAGCATTAGTGGAATTGCTAGCCCAGTTGGTTCATACATTTTCAATGTGAAAGTAGCTGGCTATTTATACGACCAAGAGGCTAGAAAGCAAATGGATTTCGGTCTTAGAAATGTAGCTGGTAGAGACTTAGCCTGCAAGGGCGTCCATTGTTACAGATTAGCTTTTCTCATTATCTCTGCTGCAACCATGTTCGGTTGTTTTGTTTCATTCATTTTGGTGCTCCGAACTTGGAAATTCTACAAGGATGACATCTACAAGAAGTTTAGAGATGAAAGAAAGGAATCAAGGCAATCGATTTAG 1770 41.47 MATILKSLIQFPTFSIRTGQRRRSQMSNFAVQVLLGRWFTVFASLLIMSVSGATYMFALYSSDIKSSLNYDQTTLNLVGFFKDLGSNVGVFSGLINEITPPWVVLFIGGVMNFFGYFMIWLSVTHRIPKPKLPAMCLFTFLGANSQTFANTGALIPSVKNFPQNRGYVLGLLKGFVGLSGAILTQIYHAFYGDDSKDFILLIAWLPTAVSLLLLRIVRVVEANPTFKSNDLKNFYSMLYISLGLAGFLMILIIIQNELMFTRIQYLGCVFVLLTFLFLPLVVIIREEFGIRKRKLQGVDVTSWLPVPSDESPDELPLPRTSSFPTTDTALANPSSCFENVFRPPERGEDYTILQAIFSVDMLILFFVTICGAGGTLTAMDNLGQIGSSLGYSTHTISTFTSLVSIWGFLGRAFSGYASEFLWTKYNFSRPLFLTLVLLLSCFGHLLIASGLPTSVYFASVIIGFCFGAQWPLIFAIVSELFGLKYYATLYSISGIASPVGSYIFNVKVAGYLYDQEARKQMDFGLRNVAGRDLACKGVHCYRLAFLIISAATMFGCFVSFILVLRTWKFYKDDIYKKFRDERKESRQSI* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23040506 23043250 - CsaV3_6G040060.1 Csa06g02620 534247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02620 589 Pfam Nodulin-like 37 283 IPR010658 -
Csa06g02620 589 CDD MFS_Mch1p_like 36 556 - -
Csa06g02620 589 Gene3D MFS general substrate transporter like domains 350 569 IPR036259 -
Csa06g02620 589 Pfam Major Facilitator Superfamily 363 562 IPR011701 GO:0022857|GO:0055085
Csa06g02620 589 PANTHER MFS TRANSPORTER 21 586 - -
Csa06g02620 589 SUPERFAMILY MFS general substrate transporter 36 571 IPR036259 -
Csa06g02620 589 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 21 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00205 Csa-Chr1:1319428 Csa06g02620 Csa-Chr6:23040506 2.55E-114 dispersed
Csa03g03306 Csa-Chr3:30122257 Csa06g02620 Csa-Chr6:23040506 0 dispersed
Csa05g02779 Csa-Chr5:28456728 Csa06g02620 Csa-Chr6:23040506 0 dispersed
Csa05g02780 Csa-Chr5:28460136 Csa06g02620 Csa-Chr6:23040506 0 dispersed
Csa06g02620 Csa-Chr6:23040506 Csa01g01332 Csa-Chr1:8623617 0 dispersed
Csa03g03303 Csa-Chr3:30105502 Csa06g02620 Csa-Chr6:23040506 3.17E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02620 - - csv:101203981 1142.1