Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02624 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGATTGGCTGAGTTTATCTCCACCTTGATTTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTTAATAAGCTCACCAATGACGGCGCTGCCACTCCAGCTGGTCTCATCTCCGCCTCCATCGCCCATGCCTTTGCTCTTTTCGTTGCCGTCTCCGTTGGCGCTAACATCTCCGGTGGCCATGTTAACCCCGCTGTTACCTTTGGTGCCTTCGTTGGCGGTAACATCACCCTTCTACGTGGTATCATCTACTGGATTGCTCAACTCCTCGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACTGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCAGGAGTTGGTGAACTGAACGCCTTCGTTTTCGAGATCGTCATGACATTCGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCCAACATTTTGGCCGGTGGAGCATTCACCGGAGCCTCCATGAACCCCGCCGTCGCATTCGGCCCATCAGTCGTGAGCTGGTCATGGGAAAGCCACTGGATCTACTGGGCCGGGCCTTTGATCGGTGGTGGCCTTGCTGGTCTCATCTACGAATTCATCTTCATCTCCAACTCCCACGAGCAACTCCCAACCACCGACTACTAA 753 53.78 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWESHWIYWAGPLIGGGLAGLIYEFIFISNSHEQLPTTDY* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23064934 23066843 - CsaV3_6G040100.1 Csa06g02624 534251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02624 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Csa06g02624 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Csa06g02624 250 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Csa06g02624 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Csa06g02624 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02624 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Csa06g02624 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02624 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02624 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02624 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02624 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02624 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02624 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03313 Csa06g02624 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02624 Csa-Chr6:23064934 Csa06g02564 Csa-Chr6:22678455 7.07E-41 dispersed
Csa01g00765 Csa-Chr1:4860621 Csa06g02624 Csa-Chr6:23064934 8.51E-102 transposed
Csa02g02273 Csa-Chr2:20340077 Csa06g02624 Csa-Chr6:23064934 2.48E-82 transposed
Csa03g01364 Csa-Chr3:10276633 Csa06g02624 Csa-Chr6:23064934 4.82E-19 transposed
Csa04g00205 Csa-Chr4:1203374 Csa06g02624 Csa-Chr6:23064934 3.67E-23 transposed
Csa05g00429 Csa-Chr5:2845610 Csa06g02624 Csa-Chr6:23064934 2.49E-103 transposed
Csa05g00519 Csa-Chr5:3336038 Csa06g02624 Csa-Chr6:23064934 4.65E-58 transposed
Csa05g01810 Csa-Chr5:21392695 Csa06g02624 Csa-Chr6:23064934 2.81E-115 transposed
Csa07g02263 Csa-Chr7:21111287 Csa06g02624 Csa-Chr6:23064934 2.47E-99 transposed
Csa03g03313 Csa-Chr3:30151604 Csa06g02624 Csa-Chr6:23064934 1.47E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02624 K09873 - csv:101204225 483.411