Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02628 ATGCAAAGGGTATGGGGATTTTTGGTGATTATGTTGTGGCTAAGTATAATTGGGGATGCAACAAATTTAGGAGCCACATTGAAACGTGCAAAACGGCATAGGCAATTAGGAGAAGGGGCGACGATTATTAAACAGCATCGTAGGCCGCCGTTTAAGCCCGGCCCTTGGAACCACGCTCATGCTACCTTCTATGAAGGTGGCTCCGGAACTTTTGGTGCTGCGTGTGGGTACGAAGACGTGGAAAAGGAAGGGTATGGGATGCAGACGGCGGCGCTGAGCACGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTATGAAATAAAATGCGTGGACGATCCCCAATGGTGCAAGCCCGGGCAGCCTTCCCTAGTGGTGACGGGTACCAACCACTGCCCGCCCAATCACAACCTTCCTAATGACAACGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCCAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTATCACTTACCGCAGGGTTCCATGCAAGAAAGGAGGAGGAATTCGATTTACAATAACTGGAAATCCATATTACAACCAAGTTTTAGTATGGAACGTGGGAGGAGCTGGAGATTTGAAGAGTGTCCAAGTGAAGGGTCACCGTAAGCTCAAATGGACGTCCATGTCTCGTTCGTGGGGTCAAAAATGGATCACCAACGCCATGCTGGTTGGCGAGTCCCTCACCTTTAAGGTTCGAGCCAGTGATGGCAGATTCTCCACTTCATGGCACGTTGCTCCCCCAACTTGGCAGTTTGGGGCTTACTCTGTTCATTTCATCGTTCACAATAACTGTCCCTTCCCAATTTGGCCGGGAGCTTTAACCGGCACCGGCAACCAACTAACAACCACTGGCTTCCAATTACTCCCCGGATCAACAACCACTGTAACGACTGCTCCCCCATGGTCCGGCAGATTCTGGGCTCGAACTCTCTGTTCCACAGATCCAAATGGAAAATTCTCTTGCGCAACCGCCGATTGCGGCATTGGCCAAGTCGAGTGCAACGGCGCCGCCGCAATTCCGCCAGCCAGTCTCGTTGAATTCACGATAGCGCCCAATGGCGGCCAAGATTTCTTCGACATAAGCCTCGTCGACGGCTTCAATTTTCCGGTTGGAGTGACGCCGATTGGTGGCTCGGGTGATTGCCAAACGATACTCTGTTCAGGAGATGTAAATGTCGTCTGTCCACAGAAATTAGCCGTTACAGCGGAAGATGGCGCAGTGATTGCTTGTAAAAGTGCTTGTATGGCTTTTAATAAGCCGAAATATTGCTGCAGTGGCGACCACAGTCGGCCGGAAACTTGCCATCCGACCGACTATTCAAGGATTTTCAAGAATCAGTGTCCGCAAGCTTATAGTTACGCTTATGATGATAAGACAAGCACTTTTACTTGCGTAGGTGGAGCTGATTATGCCATTATATTTTGTCCTAATTGA 1491 50.5 MQRVWGFLVIMLWLSIIGDATNLGATLKRAKRHRQLGEGATIIKQHRRPPFKPGPWNHAHATFYEGGSGTFGAACGYEDVEKEGYGMQTAALSTALFNNGQSCGACYEIKCVDDPQWCKPGQPSLVVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRRVPCKKGGGIRFTITGNPYYNQVLVWNVGGAGDLKSVQVKGHRKLKWTSMSRSWGQKWITNAMLVGESLTFKVRASDGRFSTSWHVAPPTWQFGAYSVHFIVHNNCPFPIWPGALTGTGNQLTTTGFQLLPGSTTTVTTAPPWSGRFWARTLCSTDPNGKFSCATADCGIGQVECNGAAAIPPASLVEFTIAPNGGQDFFDISLVDGFNFPVGVTPIGGSGDCQTILCSGDVNVVCPQKLAVTAEDGAVIACKSACMAFNKPKYCCSGDHSRPETCHPTDYSRIFKNQCPQAYSYAYDDKTSTFTCVGGADYAIIFCPN* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23121300 23125974 + CsaV3_6G040140.1 Csa06g02628 534255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02628 496 Pfam Lytic transglycolase 89 176 IPR009009 -
Csa06g02628 496 Pfam Thaumatin family 281 495 IPR001938 -
Csa06g02628 496 Pfam Expansin C-terminal domain 187 265 IPR007117 -
Csa06g02628 496 SUPERFAMILY Barwin-like endoglucanases 55 204 IPR036908 -
Csa06g02628 496 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 272 IPR007117 -
Csa06g02628 496 Gene3D - 41 182 IPR036908 -
Csa06g02628 496 PANTHER EXPANSIN-A15 38 272 IPR002963 GO:0009664
Csa06g02628 496 PANTHER EXPANSIN-A32 38 272 - -
Csa06g02628 496 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Csa06g02628 496 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Csa06g02628 496 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Csa06g02628 496 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Csa06g02628 496 PRINTS Expansin/Lol pI family signature 55 70 IPR007118 GO:0005576
Csa06g02628 496 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 144 161 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 161 174 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 125 135 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 111 122 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 262 278 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Csa06g02628 496 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Csa06g02628 496 SUPERFAMILY PHL pollen allergen 184 272 IPR036749 -
Csa06g02628 496 ProSitePatterns Thaumatin family signature. 336 352 IPR017949 -
Csa06g02628 496 SUPERFAMILY Osmotin, thaumatin-like protein 276 496 IPR037176 -
Csa06g02628 496 SMART tha2 277 495 IPR001938 -
Csa06g02628 496 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 186 IPR007112 -
Csa06g02628 496 ProSiteProfiles Thaumatin family profile. 274 496 IPR001938 -
Csa06g02628 496 Gene3D Thaumatin 277 495 IPR037176 -
Csa06g02628 496 Gene3D - 186 276 IPR036749 -
Csa06g02628 496 CDD TLP-PA 277 494 - -
Csa06g02628 496 SMART dpbb_1 89 176 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03319 Csa06g02628 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02628 Csa-Chr6:23121300 Csa04g01497 Csa-Chr4:14702397 1.41E-102 dispersed
Csa05g03131 Csa-Chr5:31221722 Csa06g02628 Csa-Chr6:23121300 6.53E-119 transposed
Csa03g03319 Csa-Chr3:30190090 Csa06g02628 Csa-Chr6:23121300 1.62E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02628 - - csv:101204720 589.341