Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02633 ATGCGCCTCTTTTTCTGCTTCATCTATGCCTTAGCCTCCGTCGTTGCTCTCACCCTCGCCGGCACGGCGGTTATCTCCCCCGGCCCCAACCATTTCCTTCTCCACAGAGCCTTCCCCCACTTTCCCTCTCCCCACTTTCACTCCCTCAAAGCTCGCGACCGCCTCCGCCATTCCCGCCTCTTGCGACGACTCGCCGGTGGCATCGTCAATTTCTCCGTTAAAGGCTCCTCCAATCCTTTCGTCGGGCTTTATTTCACCAAGGTGAAGTTGGGAAATCCTGCGAGGGAATTCAATGTGCAGATCGATACTGGGAGTGACATTTTGTGGGTCACTTGCAGTCCTTGCGATGGCTGTCCTGATTCGAGCGGACTTGGAATTGAACTCAACTTATTTGATACTACAAAGTCGTCCTCTGCTAGGGTTCTTCCCTGCACAGATCCAATATGTGCAGCAGTTTCAACTACTACAGATCAATGCTTAACCCAGACTGACCATTGCAGTTACTCCTTCCACTATCGGGATAGAAGTGGAACGTCCGGCTTTTATGTTACTGATTCGATGCATTTTGACATACTTCTTGGGGAGTCAACTATTGCTAATTCATCAGCAACTATTGTTTTTGGGTGCAGCATATATCAGTATGGGGATTTGACTCGGGCAACCAAAGCACTTGATGGAATTTTTGGGTTTGGTCAAGGGGAGTTCTCAGTTATTTCACAATTATCTTCTCGAGGGATAACACCTAAAGTGTTCTCCCATTGTTTGAAAGGAGGAGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACATTAAAGTTACAGAGTATTGCACTCAGTGGGCAACTGTTTCCAAACCCCACCATGTTTCCTATATCAAATGCAGGAGAAACTATTATTGACTCCGGGACAACTTTGGCATACCTTGTCGAAGAAGTTTATGATTGGATTGTCAGTGTGATAACTTCTGCTGTTTCTCAGTCAGCCACTCCCACAATTTCGAGGGGTAGCCAATGCTTCAGAGTCTCTATGAGTGTAGCAGACATATTTCCTGTCCTCAGGTTTAATTTTGAGGGCATTGCATCCATGGTGGTGACTCCTGAAGAATATCTTCAGTTTGACTCCATAGAACCAGCCTTATGGTGCATAGGTTTTCAGAAAGCTGAGGATGGATTGAACATTTTAGGAGATCTTGTTTTGAAAGATAAAATCATTGTCTATGACTTAGCTCGGCAACGGATTGGATGGGCGAATTATGACTGTTCGTCGTCCGTAAATGTTTCTGTAACATCTGGAAAGGATGTTTTCATCAATGAAGGACAGCTGAGTGTAAGCAGCTCCTCAAGGAAGCATTTCTATCAGCTGCTCAACATTGTTATTGTACTACTAATACATTTAAAACTGTTCTGA 1461 45.24 MRLFFCFIYALASVVALTLAGTAVISPGPNHFLLHRAFPHFPSPHFHSLKARDRLRHSRLLRRLAGGIVNFSVKGSSNPFVGLYFTKVKLGNPAREFNVQIDTGSDILWVTCSPCDGCPDSSGLGIELNLFDTTKSSSARVLPCTDPICAAVSTTTDQCLTQTDHCSYSFHYRDRSGTSGFYVTDSMHFDILLGESTIANSSATIVFGCSIYQYGDLTRATKALDGIFGFGQGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLKLQSIALSGQLFPNPTMFPISNAGETIIDSGTTLAYLVEEVYDWIVSVITSAVSQSATPTISRGSQCFRVSMSVADIFPVLRFNFEGIASMVVTPEEYLQFDSIEPALWCIGFQKAEDGLNILGDLVLKDKIIVYDLARQRIGWANYDCSSSVNVSVTSGKDVFINEGQLSVSSSSRKHFYQLLNIVIVLLIHLKLF* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23182726 23188308 + CsaV3_6G040190.1 Csa06g02633 534260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02633 486 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Csa06g02633 486 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Csa06g02633 486 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Csa06g02633 486 PANTHER ASPARTYL PROTEASES 8 455 IPR001461 GO:0004190|GO:0006508
Csa06g02633 486 SUPERFAMILY Acid proteases 79 442 IPR021109 -
Csa06g02633 486 Pfam Xylanase inhibitor C-terminal 286 434 IPR032799 -
Csa06g02633 486 Pfam Xylanase inhibitor N-terminal 84 268 IPR032861 -
Csa06g02633 486 Gene3D Acid Proteases 269 446 IPR021109 -
Csa06g02633 486 ProSiteProfiles Peptidase family A1 domain profile. 84 434 IPR033121 -
Csa06g02633 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 455 - -
Csa06g02633 486 Gene3D Acid Proteases 68 268 IPR021109 -
Csa06g02633 486 CDD pepsin_A_like_plant 84 438 IPR034161 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01787 Csa-Chr4:17529624 Csa06g02633 Csa-Chr6:23182726 2.44E-33 dispersed
Csa06g00379 Csa-Chr6:3148870 Csa06g02633 Csa-Chr6:23182726 8.91E-86 dispersed
Csa06g02143 Csa-Chr6:19175816 Csa06g02633 Csa-Chr6:23182726 5.78E-36 dispersed
Csa06g02633 Csa-Chr6:23182726 Csa06g03358 Csa-Chr6:27987347 2.52E-36 dispersed
Csa03g03337 Csa-Chr3:30272598 Csa06g02633 Csa-Chr6:23182726 0 wgd
Csa06g01256 Csa-Chr6:10534832 Csa06g02633 Csa-Chr6:23182726 2.37E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02633 - - csv:101205203 922.539