Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02638 ATGGATGCTCTTCTTCTCAACGCACCCACTTCACACCCAATTCCTCGTAAATCCTTCCTTCCATCCCCTCCTTCCTTCTTCAATGGCTCCTCCATTTCGATTGATGACAATCGAAACAGAGTTCGACTTACCAGGCCTCCAATCATCCTAGCCACGCTTTCAAAGCACGCCCTTGATATCCCTCCTAATTCTGTATCCAACACTTCGGTTCCGACTCCTGCAGATGCATTGGCGCCTACCCCTTTGCCTCCTCGCAAAAGGGTATCGGCGGATTCTCTGCAGTTCCCGCCTGGCTATCTTGGCGCTGTTCCGGACCGTTCCGGTTCTGATAATGGCGAGGATAGTGTTGACGCCATGGAGTATTTGACTAGAATATTGGGTTCGAAGGTTTATGATGTGGCTATTGAATCGCCCTTGCAGCTTGCGCCGACGTTGTCTGAACGGTTTGGGGTTAATATCTGGCTGAAGAGGGAGGACTTGCAGCCTGTGTTCTCATTCAAGCTCCGAGGAGCTTATAATATGATGGCCAAACTTCCAAAAGAACAGTTGGAAAAAGGAGTTATATGCTCTTCAGCTGGAAATCATGCTCAAGGGGTTGCATTAGCTGCTAAGCGATTAAGATGTAATGCTGTTATTGCTATGCCAGTTACTACACCTGAAATTAAGTGGCAATCAGTTCAAAAATTGGGTGCGACGGTTGTTCTTGTTGGAGATTCATACGATGAGGCACAAGCATATGCTAAAAAGCGGAGCGTAGAGGAAGGCCGCACATTCATTCCCCCTTTCGATCACCCTGATGTTATAGCAGGGCAGGGTACAGTTGGGATGGAAATTGTGCGTCAAATAAAAGGTCCAGTGCATGCAATTTTTGTACCAGTTGGGGGCGGTGGTCTAATAGCTGGTATTGCTGCTTATGTCAAAAGGGTTTCTCCTGAGGTAAAGATCATTGGGGTAGAGCCATCTGATGCAAATGCTATGGCATTATCATTATGTCATGGCCAAAGAGTAATATTGGACAAGGCTGGAGGCTTTGCTGATGGTGTAGCAGTTAAAGAAGTCGGTGAAGAGACTTTTCGCCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGCCGTGATGCTATATGTGCCTCGATAAAGGATATGTTTGAGGAGAAGAGAAGCATCTTGGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCTGAGGCCTACTGCAAATATTATGGCTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTGAGTATAGTTACTGAACTTGCCAATGTTGGTCGTGAGAAAGAGGCTGTGCTTGCAACTATATTGCCGGAGACACCTGGAAGCTTTAAAAAATTTTGTGAACTGGTTGGGCCTATGAACATTACAGAATTCAAGTACAGATATAGTTCTGAAAAAGAAGCTGTTGTTCTTTATAGTGTTGGTATCCATATGCCTTCTGAACTAGAGGAAATGAAGGATAGGATGGAATCGTCTCAGCTTCCAACTTATAATCTCACAAAGAATGATCTTGTAAAGGATCACTTGCGTTACTTGATGGGAGGCAAATCAAATGTCGAAAACGAAGTTCTTTGTCGTTTTATTTTCCCAGAAAGGCCAGGTGCTCTAGAAAAGTTCTTAGATGCTTTGAGTCCTCGCTGGAACATTACTTTGTTTCATTATCAAAGCAAGGGTGAAACTGGTGCAAATATATTAGTTGGGCTTCAGATTGAAAAACCCGACATGGGCGAATTCCATGAACGTGCTCGAAGGGTCGGATACGATTACGTTGTGGTAACTGATGATGGTATCTTTCAGCTTCTGATGCATCATAGACCATCCCACAAGGCCATAGATCTCTTAAGTTGA 1893 44.48 MDALLLNAPTSHPIPRKSFLPSPPSFFNGSSISIDDNRNRVRLTRPPIILATLSKHALDIPPNSVSNTSVPTPADALAPTPLPPRKRVSADSLQFPPGYLGAVPDRSGSDNGEDSVDAMEYLTRILGSKVYDVAIESPLQLAPTLSERFGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKEQLEKGVICSSAGNHAQGVALAAKRLRCNAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSVEEGRTFIPPFDHPDVIAGQGTVGMEIVRQIKGPVHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRVILDKAGGFADGVAVKEVGEETFRLCKDLMDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLSIVTELANVGREKEAVLATILPETPGSFKKFCELVGPMNITEFKYRYSSEKEAVVLYSVGIHMPSELEEMKDRMESSQLPTYNLTKNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDALSPRWNITLFHYQSKGETGANILVGLQIEKPDMGEFHERARRVGYDYVVVTDDGIFQLLMHHRPSHKAIDLLS* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23225946 23232224 + CsaV3_6G040240.1 Csa06g02638 534265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02638 630 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 120 616 IPR005787 GO:0004794|GO:0009097
Csa06g02638 630 SUPERFAMILY ACT-like 525 617 IPR045865 -
Csa06g02638 630 Gene3D - 170 261 IPR036052 -
Csa06g02638 630 Pfam C-terminal regulatory domain of Threonine dehydratase 435 524 IPR001721 -
Csa06g02638 630 Pfam C-terminal regulatory domain of Threonine dehydratase 529 615 IPR001721 -
Csa06g02638 630 ProSiteProfiles ACT-like domain profile. 538 609 IPR001721 -
Csa06g02638 630 CDD ACT_ThrD-I_1 444 527 - -
Csa06g02638 630 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 62 617 - -
Csa06g02638 630 MobiDBLite consensus disorder prediction 64 83 - -
Csa06g02638 630 Gene3D - 138 416 IPR036052 -
Csa06g02638 630 Gene3D Biosynthetic Threonine Deaminase; Domain 3 444 618 IPR038110 -
Csa06g02638 630 PANTHER THREONINE DEHYDRATASE 62 617 - -
Csa06g02638 630 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 120 472 IPR036052 -
Csa06g02638 630 CDD ACT_ThrD-I_2 537 617 - -
Csa06g02638 630 CDD Thr-dehyd 122 426 - -
Csa06g02638 630 Pfam Pyridoxal-phosphate dependent enzyme 133 422 IPR001926 -
Csa06g02638 630 ProSiteProfiles ACT-like domain profile. 445 516 IPR001721 -
Csa06g02638 630 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 158 171 IPR000634 GO:0006520|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02634 Csa-Chr6:23190196 Csa06g02638 Csa-Chr6:23225946 0 dispersed
Csa06g02635 Csa-Chr6:23195757 Csa06g02638 Csa-Chr6:23225946 0 dispersed
Csa06g02636 Csa-Chr6:23208561 Csa06g02638 Csa-Chr6:23225946 1.94E-12 dispersed
Csa06g02637 Csa-Chr6:23213736 Csa06g02638 Csa-Chr6:23225946 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02638 K01754 - csv:101205909 1221.45