Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02640 ATGGCAGCCATTGTTTCACTTTCTACAAACCCCATTTCTCCACTTTCTCTTCTTCCTCCCACCATCTTCTTCCGCTTTCCTTCTATGCCCACCAATCCTTCTCCTTCAACACCACCACCACCACCACCACATCTATCCAAAACTTCTTTATCTCTCTCTAACCCAAACCCCTGTCTCCGCCCATTCAATTCCACCTCTCCCACCCAATTCTTCACCTCCCCACAACACCTTGTCTCCCTTTCAGAACCCCTTTTCGCTTCACGCTCTCTGAACACCTCTCTTTCTACCATTGCCTCCCCCTTCGACTTGCTTCGTCTATCCACTCGCTACGGTGACCCTGACCTCGCTAGAGCTGTTCATGCTCAGTTTCTCAAGCTCGAGGAAGATATCTTCCTGGGTAATGCTCTAATTTCGGCTTATCTCAAATTGGGACTTGTTCGAGATGCTGATAAAGTCTTTTCTGGCCTTTCTTGTCCTAATGTGGTGTCTTATACGGCGTTGATTTCTGGGTTTTCCAAGTCGGATTGGGAAGATGAGGCTGTTGAGCTTTTCTTTGCGATGTTGGACTCTGGTATTGAGCCGAATGAATATACTTTTGTAGCAATTTTGACGGCTTGTATTCGAAATATGGATTATCAGTTAGGTTCGCAAGTTCATGGTATTGTCGTCAAATTAGGATTGTTGAGTTGTGTTTTCATTTGCAATGCACTTATGGGGTTGTATTGTAAGTGTGGGTTTTTGGACCTTGTACTTAGATTGTTCGAGGAAATGCCTGAGAGAGACATTACTTCATGGAATACTGTTATCTCGAGTTTGGTGAAGGAGTTCAAGTATGACGAAGCGTTTGATTACTTTCGTGGTATGCAGCTATGTAAAGGTCTCAAAGTGGATCATTTCTCTCTTTCTACTCTATTGACTGCTTGTGCTGGTAGTGTTAAGCCAATGAAAGGCCAACAACTTCATGCTCTTGCTTTGAAGGTCGGGCTGGAGTCTCATTTGAGTGTCAGCAGTTCCCTTATTGGTTTCTATACTAAATGTGGGAGTGCAAATGATGTAACGGATCTGTTTGAGACAATGCCAATAAGAGATGTTATTACTTGGACAGGAATGATAACGTCTTACATGGAATTTGGAATGTTGGATTCGGCAGTCGAAGTTTTTAATAAGATGCCAAAGAGGAACTGCATCTCTTATAATGCTGTTTTGGCAGGACTTTCAAGGAATGACGATGGGTCTAGAGCTCTGGAACTTTTCATTGAAATGTTGGAGGAGGGTGTAGAAATATCAGATTGCACATTGACTAGCATCATCACTGCTTGTGGGTTGCTCAAAAGTTTTAAAGTTAGCCAACAGATTCAAGGCTTCGTCATGAAATTCGGTATTTTGTCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTGTGGAAGGATGGAGGATGCTGAAAAGATATTTTATCAGCGTTCATTAGAGAATGACTACACTGCAATGCTAACATCAATGATTTGTGGGTATGCTCGAAATGGGAAACTTAATGAAGCGATCTCTCTCTTCCACTCTGGTCAATCTGAAGGAGCCATTGTTATGGATGAAGTTATGTCGACATCAATACTCTCTCTATGTGGGAGTATAGGCTTTCATGAGATGGGGAAGCAAATGCATTGCCATGCACTTAAATCAGGTCTCATAACTGAGACTGGGGTAGGAAATGCAACAGTTAGCATGTACTCGAAGTGCTGGAATATGGATGATGCGGTCCGTGTATTCAATACAATGAACATGCAAGACATCGTTTCTTGGAATGGTTTAGTTGCTGGGCATGTGCTCCATTGGCAGGGTGATAAAGCCTTGGGAATTTGGAAGAAGATGGAAAAGGCAGGAATAAAACCTGACAGTATTACGTTTGCTTTGATTATTTCAGCATACAAACACACTGAATTGAATTTAGTTGATAGTTGTCGCAGTTTATTTGTCTCTATGGAAACTGAACACAATATCAAACCCACTTTAGAGCATTATGCCTCCTTCATCAGTGTTTTGGGTCGTTGGGGTCTTCTTGAAGAAGCTGAACAAACAATCAGGAATATGCCTTTAGAACCGGATGTTTATGTATGGCGTGCTTTGCTTAATAGTTGTAGAATCAACAAAAATGAAAGGCTGGAAAAACTTGCTGCCAGAAACATACTGGCAGTGGAGCCAAAAGATCCATTATCTTACATACTTAAGTCGAATCTATACTCTGCATCAGGGAGATGGTACTATTCTGAAAAGGTGAGAGAAGATATGCGAGAGAAAGGGTTCCGGAAACACCCAAGTCAGAGCTGGATCATTCATGAGAACAAAATTCATTCATTTTATGCCAGAGACAGGTCTCATCCTCAAGGAAAAGACATTTACAGTGGATTAGAGATACTAATCTTAGAATGTTTAAAGGTTGGTTATGTTCCGGACACAAGTTTTGTTCTTCAAGAAGTAGAGGAACGCCAAAAGAAGGAATTTTTGTTTTATCACAGTGGAAAATTAGCTGCAACTTTTGGGATTCTAATGACCAAACCGGGAAAGCCTATTCAAATTGTGAAGAATGTCCGTTTGTGTGGAGATTGCCATAACTTCTTGAAATATGTTTCTATTGTCACCAGAAGGAAAATACTTCTTAGGGACACTTCGGGGTTTCATTGGTTTATAGATGGCCAATGCTCATGTACAGATTACTGGTAA 2727 41.25 MAAIVSLSTNPISPLSLLPPTIFFRFPSMPTNPSPSTPPPPPPHLSKTSLSLSNPNPCLRPFNSTSPTQFFTSPQHLVSLSEPLFASRSLNTSLSTIASPFDLLRLSTRYGDPDLARAVHAQFLKLEEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEILILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLCGDCHNFLKYVSIVTRRKILLRDTSGFHWFIDGQCSCTDYW* 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23236567 23239881 + CsaV3_6G040260.1 Csa06g02640 534267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02640 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Csa06g02640 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Csa06g02640 908 PANTHER OS07G0172600 PROTEIN 61 434 - -
Csa06g02640 908 PANTHER OS07G0172600 PROTEIN 503 894 - -
Csa06g02640 908 PANTHER OS07G0172600 PROTEIN 430 492 - -
Csa06g02640 908 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Csa06g02640 908 TIGRFAM PPR: pentatricopeptide repeat domain 162 196 IPR002885 -
Csa06g02640 908 TIGRFAM PPR: pentatricopeptide repeat domain 501 523 IPR002885 -
Csa06g02640 908 TIGRFAM PPR: pentatricopeptide repeat domain 264 297 IPR002885 -
Csa06g02640 908 TIGRFAM PPR: pentatricopeptide repeat domain 601 635 IPR002885 -
Csa06g02640 908 TIGRFAM PPR: pentatricopeptide repeat domain 365 395 IPR002885 -
Csa06g02640 908 TIGRFAM PPR: pentatricopeptide repeat domain 233 262 IPR002885 -
Csa06g02640 908 Gene3D Tetratricopeptide repeat domain 496 650 IPR011990 GO:0005515
Csa06g02640 908 Gene3D Tetratricopeptide repeat domain 318 458 IPR011990 GO:0005515
Csa06g02640 908 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 61 434 - -
Csa06g02640 908 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 430 492 - -
Csa06g02640 908 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 503 894 - -
Csa06g02640 908 Pfam DYW family of nucleic acid deaminases 816 908 IPR032867 GO:0008270
Csa06g02640 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Csa06g02640 908 Pfam PPR repeat family 396 440 IPR002885 -
Csa06g02640 908 Pfam PPR repeat family 159 207 IPR002885 -
Csa06g02640 908 Pfam PPR repeat family 599 645 IPR002885 -
Csa06g02640 908 Pfam PPR repeat family 261 309 IPR002885 -
Csa06g02640 908 Pfam PPR repeat 676 699 IPR002885 -
Csa06g02640 908 Pfam PPR repeat 576 596 IPR002885 -
Csa06g02640 908 Pfam PPR repeat 501 524 IPR002885 -
Csa06g02640 908 Pfam PPR repeat 365 395 IPR002885 -
Csa06g02640 908 Pfam PPR repeat 469 489 IPR002885 -
Csa06g02640 908 Pfam PPR repeat 134 154 IPR002885 -
Csa06g02640 908 MobiDBLite consensus disorder prediction 31 46 - -
Csa06g02640 908 Pfam E motif 723 779 IPR046848 -
Csa06g02640 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Csa06g02640 908 MobiDBLite consensus disorder prediction 29 50 - -
Csa06g02640 908 Gene3D Tetratricopeptide repeat domain 220 317 IPR011990 GO:0005515
Csa06g02640 908 Gene3D Tetratricopeptide repeat domain 651 781 IPR011990 GO:0005515
Csa06g02640 908 Gene3D Tetratricopeptide repeat domain 84 219 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02640 Csa-Chr6:23236567 Csa04g02096 Csa-Chr4:21465222 1.57E-45 dispersed
Csa06g02640 Csa-Chr6:23236567 Csa03g01691 Csa-Chr3:12669403 1.92E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02640 - - csv:101205681 1773.83