Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02642 ATGAAGTTCCCGGTCTTTGTAATCCCCCTCATCGCCGTTTCTTGTTTTCTTGCTGTTTTAGGTCCTCGTTTCAACACCGATTGGACCATTTTCTTTGACAAATATGCTTCAACCCAGCCCTCTCTTTCTTCTTCCTTCAAAAGAGAGGGATTTCATTCTAATACCTCCGTTCCGGTAGCGACGGAGGAGGCCGCGGCGGCGAATGTCTCTGTTCTTTCTTTTTCTTCTCCACCGCCACCAGTGGACGACGGAAAACAAAGTCTTCAACTACACCCAAACAGGACGAGAGTCAACGAAGATTTGGGAGAAACCGCGACCACCATTAATGAAGTGATCAGAAAGGTTTCTAATGAAAGTAGTTATGAATCAGCGGTGAAAGTGAGAGCAAGAAGGCAGAGAGAATATACAAAATTGGAGAGAATTGAAGCAGGGCTACGAAGAGCAAGAGCCGCCATTAGAGAAGCTAAGTTCCTTAATCAAACGCAAGATCCTGACTTCGTTCCTTCTGGTCCAATGTATTGGAATTCCAAAGCATTTCACAGGAGTTACCTTGAGATGGAGAAGGAGATGAAGATCTTTGTGTATGAAGAAGGAGAGCCTCCCCTGTTTCACAATGGCCCTTGTAAGAGCATTTACTCAACTGAAGGTAACTTCATCCACGCCATCGAAATGGACTCCCAATTTCGAACCAAAGATCCCAACAAGGCCCATGTATTCTTCCTACCTTTAAGTGTTGCCATGCTCGTTCGGTTCGTCTATGTTCATGACTCACATGACTTCACTCCAATACGACACACTGTCGTTGATTACATCAATGTCATTGGAACCAAATACCCGTTTTGGAATCGTTCACTCGGTGCTGATCATTTCATGCTCTCCTGCCATGATTGGGGTCCGGAAGCATCGAAGTCAGTCCCCAATCTATACAAAAACTCGATTCGAGTACTCTGTAATGCGAACACCTCCGAAGGGTTCAACCCGTCGAAGGACGTATCATTCCCAGAAATCAATCTACAAACAGGCCACTTGACTGGATTTCTTGGCGGCCCATCTCCCTCCCACCGCCCAATAATGGCCTTCTTCGCCGGTGGGCTTCACGGCCCAATAAGACCCATTCTAATCCAACGGTGGGAGAACCAAGACCAAGACATTCAAGTCCACCAATATCTCCCCAAGGGGGTCTCTTACATTGACATGATGAGGAAGAGCAAGTTCTGTCTCTGCCCCAGTGGCTACGAAGTCGCCAGTCCTAGGATTGTTGAGGCCATTTACACCGGCTGCGTTCCCGTCCTCATTTCCGACCACTACGTTCCACCATTCAGCGACGTAATCAATTGGAAATCTTTCTCGGTTGAAGTGTCGGTCGATGATATTCCAAACTTGAAGACGATCTTGACAGGAATATCGACACGGCAGTACTTGAGAATGTATAGGAGAGTGGTGAAAGTTAGGAGACACTTCGAAGTGAACTCTCCGCCGAAGAGATACGATGTATATCATATGATTTTACATTCTGTATGGCTTAGAAGACTCAATCTTAGGTTACGTTGA 1551 46.29 MKFPVFVIPLIAVSCFLAVLGPRFNTDWTIFFDKYASTQPSLSSSFKREGFHSNTSVPVATEEAAAANVSVLSFSSPPPPVDDGKQSLQLHPNRTRVNEDLGETATTINEVIRKVSNESSYESAVKVRARRQREYTKLERIEAGLRRARAAIREAKFLNQTQDPDFVPSGPMYWNSKAFHRSYLEMEKEMKIFVYEEGEPPLFHNGPCKSIYSTEGNFIHAIEMDSQFRTKDPNKAHVFFLPLSVAMLVRFVYVHDSHDFTPIRHTVVDYINVIGTKYPFWNRSLGADHFMLSCHDWGPEASKSVPNLYKNSIRVLCNANTSEGFNPSKDVSFPEINLQTGHLTGFLGGPSPSHRPIMAFFAGGLHGPIRPILIQRWENQDQDIQVHQYLPKGVSYIDMMRKSKFCLCPSGYEVASPRIVEAIYTGCVPVLISDHYVPPFSDVINWKSFSVEVSVDDIPNLKTILTGISTRQYLRMYRRVVKVRRHFEVNSPPKRYDVYHMILHSVWLRRLNLRLR* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23244775 23247939 + CsaV3_6G040280.1 Csa06g02642 534269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02642 516 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Csa06g02642 516 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 112 515 IPR004263 GO:0006486|GO:0016757
Csa06g02642 516 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 215 444 - -
Csa06g02642 516 PANTHER EXOSTOSIN FAMILY PROTEIN 112 515 - -
Csa06g02642 516 Pfam Exostosin family 187 466 IPR040911 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03141 Csa-Chr5:31280130 Csa06g02642 Csa-Chr6:23244775 5.50E-171 dispersed
Csa06g02642 Csa-Chr6:23244775 Csa07g01724 Csa-Chr7:17708933 8.45E-107 dispersed
Csa06g02642 Csa-Chr6:23244775 Csa02g02401 Csa-Chr2:21233287 2.60E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02642 - - csv:101205910 1035.79