Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02644 ATGGACACTAAGAACCAAGAGGAAGATCATACCGACAGCAGCGATTACACGTCCGACGACGAGGGTAGTGAAGACTACCGGCGTGGAGGTTACCACGCTGTTCGAATTGGCGATACTTTCAAGAATGGTAGATATGTGGTGCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACCGTATGGCTCGCCTGGGACACCCAATCCTCTCGATATGTAGCTCTCAAAGTGCAGAAGAGTGCTCAGCACTACACTGAGGCAGCGATGGATGAGATTACAATCTTGAAACAGATTGCTGAGGGAGACCCTGATGATAAAAAATGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGACCTAATGGGCAGCATGTTTGTATGATTTTTGAGTATTTGGGGGATAATCTGTTGACATTAATAAAGTATACTGACTACCGTGGATTACCAATTCATATGGTTAAGGAGATATGTTTTCATATATTGGTTGGCTTAGATTACTTGCATAAACAGCTCTCTATTATACATACTGATTTGAAGCCTGAAAATATTTTGTTACTGTCAATGATTGACCCATCAAAGGATCCTAGAAAATCTGGTATCCCTCTCATTCTTCCAACTAACAAGGACAAGGCTACATTTGAGTCCGGGATTTCAAAAGAGATTAAATTTTCAAATGGAGATTTGACTAAACACCATAAGAGAAACATTCGAAGAAAGGCAAAGCAAGCTGCTCAGGGGTGTGTGGAGAAGGAAATGACTGCAGAGGCTGAGACTAATCCAGAAACTTCCGGTACTGTTGAATCATCTCCAAATGCAAAGTCGAGTGCAGGTGCAGCGGAGGAAAGACAATCTAGTTCTTTCAAAACAAACAGGTCATTGGATGCTGATGGTGCAAAGGGCGACGGAGAAGAAAATCAAGTTGCCAAGAAAGGGAGTCGATTGAGAAAGAAAATGTTATTGGCTTCGTTGGATCTGAATTGCAAGCTGGTTGACTTTGGAAATGCATGTTGGACATACAAACAGTTTACAAATGACATTCAGACTAGACAATATAGGTGCCCAGAAGTTATCCTTGGATCTAAATACTCTACATCAGCAGATCTTTGGTCATTTGCATGCATTTGTTTTGAGCTTGCAACTGGTGATGTACTCTTTGATCCTCACAGTGGAGACAACTTCGACAGAGATGAGGACCACCTAGCTTTGATGATGGAACTTCTTGGAATGATGCCGCGCAAGATTGCTTTCGGAGGTCGCTATTCTCGAGATTTCTTCAATCGATATGGAAATTTGAGGCACATCCGGAGGTTACGTTTCTGGCCATTAAACAAAGTTCTCATGGAGAAGTATGATTTCAACGAACAAGATGCAAATCAAATGGCAGAATTTCTAGTACCAATTCTTGATTTTGTTCCAGAAAACCGACCCTCTGCAGGTGAATGCCTTCTTCATCCATGGATGAACGCTGGTCCTCGGTTGTTGGAACCATCCCTGAATCCCTCGACTTCTGAGGAGAATAAGATGGAGAATGAAGATATGGAGGCAATGGAGGTTGGAATGAGAAAAATTGCCATTAGTTCAGATTCTGAACAAGCTAATGATTCCCATGAGTTCAAGTCCAAGATCAGCAAAGCCAATTCCTGA 1641 42.47 MDTKNQEEDHTDSSDYTSDDEGSEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQSSRYVALKVQKSAQHYTEAAMDEITILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMIFEYLGDNLLTLIKYTDYRGLPIHMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGIPLILPTNKDKATFESGISKEIKFSNGDLTKHHKRNIRRKAKQAAQGCVEKEMTAEAETNPETSGTVESSPNAKSSAGAAEERQSSSFKTNRSLDADGAKGDGEENQVAKKGSRLRKKMLLASLDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRYGNLRHIRRLRFWPLNKVLMEKYDFNEQDANQMAEFLVPILDFVPENRPSAGECLLHPWMNAGPRLLEPSLNPSTSEENKMENEDMEAMEVGMRKIAISSDSEQANDSHEFKSKISKANS* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23258912 23262855 - CsaV3_6G040300.1 Csa06g02644 534271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02644 546 Gene3D Phosphorylase Kinase; domain 1 21 127 - -
Csa06g02644 546 SMART serkin_6 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02644 546 MobiDBLite consensus disorder prediction 523 546 - -
Csa06g02644 546 MobiDBLite consensus disorder prediction 1 27 - -
Csa06g02644 546 MobiDBLite consensus disorder prediction 227 309 - -
Csa06g02644 546 MobiDBLite consensus disorder prediction 256 291 - -
Csa06g02644 546 MobiDBLite consensus disorder prediction 293 309 - -
Csa06g02644 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 544 - -
Csa06g02644 546 PANTHER SERINE KINASE-LIKE PROTEIN 12 544 - -
Csa06g02644 546 Pfam Protein kinase domain 45 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02644 546 Pfam Protein kinase domain 321 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02644 546 MobiDBLite consensus disorder prediction 531 546 - -
Csa06g02644 546 Gene3D Transferase(Phosphotransferase) domain 1 128 487 - -
Csa06g02644 546 ProSiteProfiles Protein kinase domain profile. 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02644 546 SUPERFAMILY Protein kinase-like (PK-like) 40 498 IPR011009 -
Csa06g02644 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Csa06g02644 546 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Csa06g02644 546 CDD STKc_SRPK 34 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01257 Csa-Chr6:10550212 Csa06g02644 Csa-Chr6:23258912 0 dispersed
Csa06g02644 Csa-Chr6:23258912 Csa06g03398 Csa-Chr6:28159782 1.64E-97 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78401 PF00069 Pkinase 9.50E-19 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02644 K08832 - csv:101206384 1109.36