Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02645 ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGTAGAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAGACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGCGGTGGCGGTGGAAAACGTTAA 495 47.27 MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23264027 23265896 + CsaV3_6G040310.1 Csa06g02645 534272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02645 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Csa06g02645 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Csa06g02645 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 - -
Csa06g02645 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Csa06g02645 164 SMART 4TRASH 8 46 IPR011017 -
Csa06g02645 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Csa06g02645 164 MobiDBLite consensus disorder prediction 118 164 - -
Csa06g02645 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Csa06g02645 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Csa06g02645 164 Coils Coil 112 139 - -
Csa06g02645 164 MobiDBLite consensus disorder prediction 118 136 - -
Csa06g02645 164 Gene3D - 69 140 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03359 Csa06g02645 CCT
Csa03g03359 Csa06g02645 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02462 Csa-Chr2:21682623 Csa06g02645 Csa-Chr6:23264027 1.93E-18 transposed
Csa03g04206 Csa-Chr3:36875632 Csa06g02645 Csa-Chr6:23264027 1.93E-18 transposed
Csa03g03359 Csa-Chr3:30391015 Csa06g02645 Csa-Chr6:23264027 1.47E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02645 K02896 - csv:101206866 257.684