Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02646 ATGGAATGGAATAATGGAAATATAAGTTTTAGTTCTAACTTTGTTTCTCCACCACCACAATCTTCTTCTTCCTCTGCATTGCTTTACAACTACAGCTTCAACTGCAACTACAATTTGGATCACTTTCCTGTAGTAGAGACAACGACACCGGTAGCAACCGGGGAAGGCGAGCAAAACATGGCTGGAGCTGGAGTGGATCATCAAAAGAAGAAGAGGTTGAGTCAAGATCAGTTGGAGGCATTGGAGAGAAGCTTTCAAGAAGAAGTAAAGCTTGATCCTGATAGAAAAATGAAGCTTTCAAAGGAACTTGGGCTTCAACCAAGGCAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGTTGGAAGACTAAGCAACTTGAGCATCTCTATGATACTCTCAAGCAACAATTTGATACTATCTCTAAGGAAAAACACAACCTTCAACAAGAGGTGATGAAATTAAGAAGCATGCTAAGAGAACAGACAACGAGGAACCAAGGGTCGATGGCTCACACGGACGTCTCTGGGGAAGAGACGACGGTGGAGTGCACGTCGGTGGAGATTCTGAGCTGTAACAATTACATGTACAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACTTGCCTTCTTATCCTTAG 675 43.41 MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFPVVETTTPVATGEGEQNMAGAGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQGSMAHTDVSGEETTVECTSVEILSCNNYMYNVEDFNQISASAPPFWWGAEAAHLPSYP* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23270808 23273299 - CsaV3_6G040320.1 Csa06g02646 534273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02646 224 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Csa06g02646 224 Coils Coil 130 164 - -
Csa06g02646 224 Gene3D - 63 130 - -
Csa06g02646 224 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Csa06g02646 224 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Csa06g02646 224 CDD homeodomain 68 125 IPR001356 GO:0003677
Csa06g02646 224 SUPERFAMILY Homeodomain-like 65 126 IPR009057 -
Csa06g02646 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 191 IPR045224 GO:0003700
Csa06g02646 224 Pfam Homeobox associated leucine zipper 124 158 IPR003106 GO:0006355|GO:0043565
Csa06g02646 224 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 15 191 - -
Csa06g02646 224 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Csa06g02646 224 SMART HOX_1 67 128 IPR001356 GO:0003677
Csa06g02646 224 Pfam Homeodomain 69 122 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03360 Csa06g02646 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02646 Csa-Chr6:23270808 Csa06g03138 Csa-Chr6:26787699 3.90E-32 dispersed
Csa06g03219 Csa-Chr6:27254198 Csa06g02646 Csa-Chr6:23270808 5.32E-28 transposed
Csa03g03360 Csa-Chr3:30395800 Csa06g02646 Csa-Chr6:23270808 2.10E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32091 PF00046 Homeodomain 2.30E-17 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02646 - - csv:101206385 429.098