Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02647 ATGCATTCCAATCACTTGCTTCTTGAGGAGCCCATTCGGATGGCTTCCATTTTGGAGCCTTCCAAGGCTAGCTTCTTTCCTACGATGACTAAGATTGTTGGTACTCTGGGTCCTAAGTCTCGATCTGTACAAGTTATTTCTGCTTGTTTGACGGCTGGAATGTCGGTTGCTCGGTTCGACTTTTCATGGGGTAGCCCGGATTACCATCAAGAGACTTTGGAAAATTTGAAGATTGCTGTTAAAAGCACCAAGAAACTTTGTGCTATTATGCTGGATACAGCGGGTCCTGAGGTGTTGGTTGTAAATAGAAGTGAGAAATCTATCTCTCTTCAGGAAGATGGGTTTCTTGTTCTAACACCCAATCAAGAACTAGAGGCATCTTCCGAGCTGCTACCTATAAATTATGATGGACTTTCAAAGGTCGTTAAGAAAGGAGACACCCTTTTTCTTGGTCAGTACCTCTTTACTGGAAGTGAAACAACATCTGTTTGGTTGGAGGTTTTCGAAGTGAAAGGAGATGATGTTGTTTGTGTGGTAAAGAACTCTGCCACTTTGGTTGGTACAATGTACACTTTGCATGCTGCTGAAATTCACATTGATCTTCCAACACTTACTGACAAAGACAAAGAGATCATAGCTACGTGGGGAGTAAAAAACAAGATTGACTTCCTCTCTCTATCACATGCTAGACATGCAGAAGATGTTCGACAAGCTCGACAATTTCTTTCTAAGCTAGGCGACCTTAACCAAACTCAAATATTCGCAAAGATTGAAAGTGTAGAAGGATTGACCAATTTTGATGACATACTACAAGAAGCAGATGGTATTATTCTTGCTCGTGGCAATTTGGGGTTAGATCTCCCACCTGAGAAGGTGTTTTTGTTTCAGAAAACTGCCCTTTATAGATGTAATATGGCTGGAAAGCCTGCTGTTTTAACTCGTGTGGTAGACAGCATGACTAACAACTTGAGACCCACGCGTGCAGAAGCTACTGATGTTGCCAATGCTGTACTTGATGGAAGTGATGCAATTCTTCTTGGGGCTGAGACATTGCGTGGATTATATCCAGTAGAAACCGTTTCTACCGTTAGTAGAATATGTGCTGAGTCAGAGAAGGTCTTCAATCAAGATTTATATTTCAAGAAGGCAGTCAAACACATCGGGGAGCCAATGTCACATTTGGAATCTATTGCCTCCTCAGCGGTTAGGGCAGCCATCAAAGTGAAGGCTTCCGTGATTATATGCTTTACTTCATCTGGAAGGGCTGCTAGATTAATTGCAAAGTATAGGCCAACAATGCCTGTTATATCTGTTGTCATTCCAAGGTTGAAAACAGATCAACTAAGGTGGAGTCTGAGTGGGGCATTTGAGGCTCGACAATCACTGATTATCAGAGGTCTTTTTCCTGTGCTTGCTGATCCTCAACACCTAGCGGACTCTAACAATGCAACGAATGAGTCTGTTCTGAAGGCTGCTCTAGATCATGGAAAGTCAGCAGGAATCATTAAGGCACATGACCGTGTAGTGGTTTGCCAGAAAGTTGGGGATGCATCAGTAGTAAAGATTATCGAGCTTGAAGATTAA 1584 42.49 MHSNHLLLEEPIRMASILEPSKASFFPTMTKIVGTLGPKSRSVQVISACLTAGMSVARFDFSWGSPDYHQETLENLKIAVKSTKKLCAIMLDTAGPEVLVVNRSEKSISLQEDGFLVLTPNQELEASSELLPINYDGLSKVVKKGDTLFLGQYLFTGSETTSVWLEVFEVKGDDVVCVVKNSATLVGTMYTLHAAEIHIDLPTLTDKDKEIIATWGVKNKIDFLSLSHARHAEDVRQARQFLSKLGDLNQTQIFAKIESVEGLTNFDDILQEADGIILARGNLGLDLPPEKVFLFQKTALYRCNMAGKPAVLTRVVDSMTNNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETVSTVSRICAESEKVFNQDLYFKKAVKHIGEPMSHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVIPRLKTDQLRWSLSGAFEARQSLIIRGLFPVLADPQHLADSNNATNESVLKAALDHGKSAGIIKAHDRVVVCQKVGDASVVKIIELED* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23276261 23286280 - CsaV3_6G040330.1 Csa06g02647 534274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02647 527 Pfam Pyruvate kinase, alpha/beta domain 395 522 IPR015795 -
Csa06g02647 527 PANTHER PYRUVATE KINASE 2 527 - -
Csa06g02647 527 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 PANTHER PYRUVATE KINASE 2 527 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 TIGRFAM pyruv_kin: pyruvate kinase 29 516 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 SUPERFAMILY PK C-terminal domain-like 358 520 IPR036918 -
Csa06g02647 527 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa06g02647 527 Gene3D - 29 370 IPR040442 -
Csa06g02647 527 Gene3D - 96 202 IPR015806 GO:0004743|GO:0006096
Csa06g02647 527 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 7 375 IPR015813 GO:0003824
Csa06g02647 527 SUPERFAMILY PK beta-barrel domain-like 96 186 IPR011037 -
Csa06g02647 527 Gene3D - 371 513 IPR036918 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02098 Csa-Chr5:24251468 Csa06g02647 Csa-Chr6:23276261 9.53E-135 dispersed
Csa06g02647 Csa-Chr6:23276261 Csa06g02648 Csa-Chr6:23289321 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02647 K00873 - csv:101206620 1022.69