Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02656 ATGGAAATGCCTGGACGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAAGTTGGAACGGGAGTTTCCACTTCCTTTTACGACTCTATAGCAGCTGGGGGAAACGTTATTAAAGGGAGAACCGATAGAGTTTTTGATTGGGATGGGATTGGTGATCACAGGTTAAACACGCAGGCGTATCGAACAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCCAGTGGAAGCAGCTACGATGATAGCTCTCTCTCTAGTGATTACTACGCACCGACGCTATCAAACGCTGCAGCAAATGAGATCAATGCATTGGAATACATCCACGATGATGATTTCAGAGTGATGAAAGCTGTGGGAAGTGGAGGTTCGTCTGGAAAGAGCTGGGCCCAGCAGACGGAAGAGAGTTATCAGTTGCAGCAGGCCTTGGCTCTTAGGCTTTCTTCAGAGGCTACTTGTGCTGATGATCCCAACTTTATGGATCCGTTGCCAGACGAGGCAGCTTTAAGGTCGTTATCCATTTCAGCTGAGGCCATCTCGCATCGATTCTGGGTAAATGGATGTATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCATATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGGCGTATACCATCATTTGAATCTCTGAAAACTGTTGACTCCAGCATCGCTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAAGAACTGCAAAACAGGGTGCATAATATTGCTTCTAGTTGTGCAACTACAAAAGGGGTTGCAGATCATTTAGCGAAGCTGGTATGCAATCACTTGGGGGGTTCAGTTTCTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAAGGAATGCAGCGATGACTTAAAGGAATGTTTGGGATCTGCCGTTATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTCCTAGCTGATTCAATTGATTTGCCCTGTCGAATTGCTAGGGGTTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAGGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTATCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATGTTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATGCTGCGTTCTCTGTCTATCAGAGGCCATTAAATAGGAAGGATGGAGATAGAAAAATCATAGTGGTTACTGGTGACAAGGACAGAAATTCTCAGTTATTGAATAAAAAAGCAGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTGTTACTTCTCAATATAGTGTACAGTCGACCCCTTTAGTAGAAAACGTAGTCCCTTTGAACCATATCTCACCCATTGGTTCCAAAGATTCTGAGCATCTCTTAGCATTGTCTCATCCAAGGGTGGATCATGCTAACAATTTACCATTTGTTGACGGTAGTCAGTTGATTAGAAAACCAAATGATCTTTCCCTTGGCTTAGAAGATTTGGTTATTCCATGGAAAGATCTTGATTTGAGAGAGAAAATTGGAGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCATGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTTCATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACATCCAAACATCGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTAACAGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCACAGACCTGGGGCACGTGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGTAATCCCCCAATTGTTCATCGCGATTTGAAATCACCAAATCTTTTGGTTGATAAGAAGTACACTGTGAAGGTTTGTGATTTTGGGCTTTCACGCTTGAAGGCACACACATTTCTTTCGTCAAAATCAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCTGATGTTTATAGTTTTGGTGTGATACTATGGGAGCTTGCTACATTGCAGCAACCATGGGGCAACATGAACCCACCGCAGGTTGTGGCAGCTGTTGGTTTCAAAGGTAAAAGGCTTGAGATCCCATGTGATTTAGATCCTCGAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCTTGGAAACGCCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACACCTCATCAAGTTCGCTCAAACGTGTCATTAGTTACTCAGTGA 2559 42.95 MEMPGRRSDYSLLSQIPDEEVGTGVSTSFYDSIAAGGNVIKGRTDRVFDWDGIGDHRLNTQAYRTGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALEYIHDDDFRVMKAVGSGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPLPDEAALRSLSISAEAISHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSIASSIEVVLIDRHSDASLKELQNRVHNIASSCATTKGVADHLAKLVCNHLGGSVSEGEDDLVSSWKECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYLIDLIGRPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESIIDFRSLAKQYFLDSQSLNVVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDRKIIVVTGDKDRNSQLLNKKAAQLNTQDGKSEQFRSCVTSQYSVQSTPLVENVVPLNHISPIGSKDSEHLLALSHPRVDHANNLPFVDGSQLIRKPNDLSLGLEDLVIPWKDLDLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNMNPPQVVAAVGFKGKRLEIPCDLDPRVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQVRSNVSLVTQ* 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23385603 23394742 + CsaV3_6G040420.1 Csa06g02656 534283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02656 852 Gene3D Phosphorylase Kinase; domain 1 570 655 - -
Csa06g02656 852 Gene3D Transferase(Phosphotransferase) domain 1 656 845 - -
Csa06g02656 852 SMART serkin_6 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02656 852 CDD STKc_MAP3K-like 583 831 - -
Csa06g02656 852 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 120 843 - -
Csa06g02656 852 ProSitePatterns Protein kinases ATP-binding region signature. 583 604 IPR017441 GO:0005524
Csa06g02656 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Csa06g02656 852 PRINTS Tyrosine kinase catalytic domain signature 651 664 IPR001245 GO:0004672|GO:0006468
Csa06g02656 852 PRINTS Tyrosine kinase catalytic domain signature 692 710 IPR001245 GO:0004672|GO:0006468
Csa06g02656 852 PRINTS Tyrosine kinase catalytic domain signature 739 749 IPR001245 GO:0004672|GO:0006468
Csa06g02656 852 PRINTS Tyrosine kinase catalytic domain signature 758 780 IPR001245 GO:0004672|GO:0006468
Csa06g02656 852 PRINTS Tyrosine kinase catalytic domain signature 802 824 IPR001245 GO:0004672|GO:0006468
Csa06g02656 852 Pfam Protein tyrosine and serine/threonine kinase 578 831 IPR001245 GO:0004672|GO:0006468
Csa06g02656 852 ProSiteProfiles Protein kinase domain profile. 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02656 852 SUPERFAMILY Protein kinase-like (PK-like) 559 831 IPR011009 -
Csa06g02656 852 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 120 843 - -
Csa06g02656 852 Pfam Ethylene-responsive protein kinase Le-CTR1 179 385 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03375 Csa06g02656 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01318 Csa-Chr6:11010803 Csa06g02656 Csa-Chr6:23385603 2.31E-74 dispersed
Csa06g02656 Csa-Chr6:23385603 Csa03g00046 Csa-Chr3:453919 9.66E-65 dispersed
Csa01g00707 Csa-Chr1:4485111 Csa06g02656 Csa-Chr6:23385603 1.59E-36 transposed
Csa01g01020 Csa-Chr1:6328698 Csa06g02656 Csa-Chr6:23385603 2.64E-50 transposed
Csa01g01842 Csa-Chr1:15509686 Csa06g02656 Csa-Chr6:23385603 1.01E-50 transposed
Csa03g01125 Csa-Chr3:8860576 Csa06g02656 Csa-Chr6:23385603 1.91E-51 transposed
Csa03g04499 Csa-Chr3:39171068 Csa06g02656 Csa-Chr6:23385603 0 transposed
Csa04g02535 Csa-Chr4:25059511 Csa06g02656 Csa-Chr6:23385603 1.03E-32 transposed
Csa04g02571 Csa-Chr4:25277399 Csa06g02656 Csa-Chr6:23385603 2.09E-26 transposed
Csa06g01155 Csa-Chr6:9630287 Csa06g02656 Csa-Chr6:23385603 1.01E-51 transposed
Csa06g01870 Csa-Chr6:16863776 Csa06g02656 Csa-Chr6:23385603 3.57E-105 transposed
Csa03g03375 Csa-Chr3:30479921 Csa06g02656 Csa-Chr6:23385603 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78402 PF07714 PK_Tyr_Ser-Thr 1.30E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02656 K14510 - csv:101208800 1676.76