Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02658 ATGTTTTTTTCCAAATCCAAAACTCTTAATTCTACATCAAACCCTCCTCGTTACCGAGGTGTCCGTCGTCGAAGCTCCGGCAAATGGGTTTCCGAGATTCGAGAGCCGAGGAAGCCCAATAGAATTTGGTTGGGAACTTTTCCTACTCCTGAAATGGCTGCCGTCGCTTACGACGTAGCAGCCCTAGCTCTCAAGGGCCCCAACGCTGACCTCAACTTTCCTAATTCGGCATCTTCGCTACCTGTGCCAGCCTCCACCGCTGCATGTGATATTCAGGCTGCAGCCACGTCTGCTGCGGCTGCTATAGGGGCGGCTGCAGCCGCAATGGGGTTAGACGATGGTAATCACGTGAGTTCGAGTAGAGAAAACGAAGGAGATGGAGAAGGATGTGAGGAAGAATTAGTAGGGGGGGGATTTGTAGATGTAGATATGATATTTGATATGCCAAATATTTTGATGAATATGGCTGAAGGAATGCTTCTTACACCTCCATCCTTCAACTTCAACATGAATGCTTCAAACGATTTTGAATATCCTTCAACCTATTCTCAAGATACCCTTTGGGAATTCCCTCCAACACATCTTGTTACCGACCATTGTTGTTGGTTGGCACCAGAAGATTTCAAGAGTTCGAAGGAAGATGGGTTGTCCATGAACCTTGAATAA 666 46.85 MFFSKSKTLNSTSNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGPNADLNFPNSASSLPVPASTAACDIQAAATSAAAAIGAAAAAMGLDDGNHVSSSRENEGDGEGCEEELVGGGFVDVDMIFDMPNILMNMAEGMLLTPPSFNFNMNASNDFEYPSTYSQDTLWEFPPTHLVTDHCCWLAPEDFKSSKEDGLSMNLE* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23400570 23403132 - CsaV3_6G040440.1 Csa06g02658 534285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02658 221 MobiDBLite consensus disorder prediction 1 19 - -
Csa06g02658 221 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Csa06g02658 221 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Csa06g02658 221 MobiDBLite consensus disorder prediction 1 25 - -
Csa06g02658 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 191 - -
Csa06g02658 221 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Csa06g02658 221 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Csa06g02658 221 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Csa06g02658 221 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Csa06g02658 221 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Csa06g02658 221 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Csa06g02658 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03387 Csa06g02658 CCT
Csa03g03387 Csa06g02658 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00589 Csa-Chr5:3899628 Csa06g02658 Csa-Chr6:23400570 1.84E-32 dispersed
Csa06g02658 Csa-Chr6:23400570 Csa02g00103 Csa-Chr2:717915 3.60E-30 dispersed
Csa03g03387 Csa-Chr3:30556186 Csa06g02658 Csa-Chr6:23400570 9.97E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32092 PF00847 AP2 1.50E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02658 - - csv:101206867 326.635