Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02664 ATGGGATCTGGTACTTGTGAGATTGTTGAAGCAAGTGAAGAAATCAAACCTGTTCAAAGTAAGAGTGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTAGATGTAAACACACTGAGAAAAAGTACACTAAAGAAGCCAATAACTGTTGGCATACCGCGCTCGCCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCATCTGAAATGGCTGCTACGAAGAGATCATCAAAACTGTCTAGCTCTTCAAGAATTTCAGAAGCTGGGCGGATCAAGACATTGTACAATTCAGTCATGGTTGAAGCCACCGAGTCAGGCTCTTCTTCAGATAATGGTAAAGGGGGACGTGTGGTTGAAATATCCCTGGTTCCAGAGGAAAAGAAATTGATCTTTGAAAAGAGACTTGAGCATGTCCGGGCATCTGCTGTTAAATCACCGGGTGCTAGTGCTCATTCTTCTCAGTTGCCCGTCGCGAAAACACAAAAACATATTGAGGTTGCTACTGTGGAATCAAACATCAAACCCACTTTGCCAAAGAAAGTTGGATCCCAAACATTAAAAGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACTCCACCATCTATATCTTCTTGCACAATTGGCAAAGTTTTGGAGAAGGAGAAGAAAATTCTTGCAGGAAGTAGGGTAGCAAATAAAGTGACATCATCTAAGGCAGGACGCAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGAAATAAGGTAACCAAGTTATCTAGAAGTGCCTCCCGTTCTGTTAAACCAGTTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGGGGATAATGATCCCAGTAAAAAGAAGTTAATATGCGAGAGGTGTCACTGTGCATTGAATAGTGCAGCTAAAGACTCCAAGAAAGGCTCTGCATCTCAGTTTAGTGCTTTTAGTAGTGATGTAAACATAACCAATCCAAAATCTGGTGGTAACAAAACAGGAATCAATGTGGATAGCAAGGCGTCTGATGTTAAAGTAAAAAGAAATGCAAGGGTACGAGATAAGGGTGAATTTTCGCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACGACGAGTATTATAAGTGATGATAGCAATGGGCATGGATCAAGTACTGGTAACAGACCTCATATGTCAAAAGATTTTAGGTGGGAAGCCATACGCAATGCACAATTGCAGCATGGGGTCCTTAGCTTGCGGCATTTTAATCTTCTAAAGAAGCTTGGTTGTGGGGACATTGGAACAGTGTATCTTGCCGAGCTAACTGACACTCAGTGCCTATTTGCCATTAAGGTCATGGACAACGAGTTTCTAGCAAGACGGAAGAAAATGCCTAGAGCACAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAGTTTACTACAGATAATCTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGGAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTTCTGCTTGCTTTGGAGTACTTACACATGCTTGGAGTTATTTATCGAGACTTGAAACCGGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTTTCGCTTAGGTGCACGGTCAATCCAACACTCCTGAAGTCGTCTTCCTTCAATGCAGACTTGGTGAAAACATCAGGTCCCTGTACAGATTCTAGTTGTGCTGAACCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCTAAAACAAGGAAGTCAAAACCTGACCTCACAACACAGATCAGGTCGTTACCCCAACTCGTTGCCGAACCCACTGATGCACGTTCGAATTCCTTTGTTGGCACTCACGAATATTTGGCTCCTGAGATCATTAAAGGAGAGGGTCATGGAGCTGCAGTTGATTGGTGGACGTTTGGTGTTTTTCTCTACGAGCTTCTGTATGGCAGAACCCCTTTCAAGGGTTCCAACAATGATGAAACATTGTCCAATGTAATAATGCAAGGCCTCAGTTTTCCCGACACCCCAATCGTTAGTTTCCAAGCAAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCCGAAAATCGTTTCGGGACAGAGAAAGGAGCTGCGGAAATCAAACAGCACCCCTTCTTCGAGGGGCTAAACTGGGCATTAATCCGGTGTGCAGTTCCTCCAGAACTTCCAGATTTATGTGATGTGGACATTACAAGTATGATTGCTCAACAAAACAAATTCAGGTATTTGGAAAGTAAGTCCACTGGAGAACACCTTGAGTTTGAATTGTTTTAG 2604 42.74 MGSGTCEIVEASEEIKPVQSKSGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVDVNTLRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAATKRSSKLSSSSRISEAGRIKTLYNSVMVEATESGSSSDNGKGGRVVEISLVPEEKKLIFEKRLEHVRASAVKSPGASAHSSQLPVAKTQKHIEVATVESNIKPTLPKKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILAGSRVANKVTSSKAGRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNGDNDPSKKKLICERCHCALNSAAKDSKKGSASQFSAFSSDVNITNPKSGGNKTGINVDSKASDVKVKRNARVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGSSTGNRPHMSKDFRWEAIRNAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELTDTQCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTTDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKPDLTTQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNDETLSNVIMQGLSFPDTPIVSFQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDVDITSMIAQQNKFRYLESKSTGEHLEFELF* 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23445828 23450740 - CsaV3_6G040500.1 Csa06g02664 534291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02664 867 MobiDBLite consensus disorder prediction 406 423 - -
Csa06g02664 867 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 867 - -
Csa06g02664 867 Gene3D Transferase(Phosphotransferase) domain 1 563 632 - -
Csa06g02664 867 Pfam Protein kinase domain 713 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02664 867 Pfam Protein kinase domain 484 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02664 867 SMART serkin_6 483 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02664 867 MobiDBLite consensus disorder prediction 11 30 - -
Csa06g02664 867 MobiDBLite consensus disorder prediction 330 347 - -
Csa06g02664 867 PANTHER FLIPPASE KINASE 1-RELATED 3 867 - -
Csa06g02664 867 CDD STKc_phototropin_like 481 837 - -
Csa06g02664 867 MobiDBLite consensus disorder prediction 273 348 - -
Csa06g02664 867 Gene3D Transferase(Phosphotransferase) domain 1 709 834 - -
Csa06g02664 867 MobiDBLite consensus disorder prediction 273 313 - -
Csa06g02664 867 MobiDBLite consensus disorder prediction 424 458 - -
Csa06g02664 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Csa06g02664 867 MobiDBLite consensus disorder prediction 385 403 - -
Csa06g02664 867 ProSiteProfiles Protein kinase domain profile. 483 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02664 867 Gene3D Phosphorylase Kinase; domain 1 481 562 - -
Csa06g02664 867 SUPERFAMILY Protein kinase-like (PK-like) 460 833 IPR011009 -
Csa06g02664 867 MobiDBLite consensus disorder prediction 385 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01551 Csa-Chr1:11109475 Csa06g02664 Csa-Chr6:23445828 0 dispersed
Csa03g03977 Csa-Chr3:34781972 Csa06g02664 Csa-Chr6:23445828 0 dispersed
Csa04g02100 Csa-Chr4:21546349 Csa06g02664 Csa-Chr6:23445828 3.67E-167 dispersed
Csa06g01288 Csa-Chr6:10775950 Csa06g02664 Csa-Chr6:23445828 1.20E-131 dispersed
Csa06g02664 Csa-Chr6:23445828 Csa06g03433 Csa-Chr6:28317839 2.59E-53 dispersed
Csa07g01557 Csa-Chr7:15913650 Csa06g02664 Csa-Chr6:23445828 3.82E-73 transposed
Csa06g01287 Csa-Chr6:10764787 Csa06g02664 Csa-Chr6:23445828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78403 PF00069 Pkinase 2.00E-36 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02664 - K08286 csv:101210027 1663.66