Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02664 | ATGGGATCTGGTACTTGTGAGATTGTTGAAGCAAGTGAAGAAATCAAACCTGTTCAAAGTAAGAGTGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTAGATGTAAACACACTGAGAAAAAGTACACTAAAGAAGCCAATAACTGTTGGCATACCGCGCTCGCCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCATCTGAAATGGCTGCTACGAAGAGATCATCAAAACTGTCTAGCTCTTCAAGAATTTCAGAAGCTGGGCGGATCAAGACATTGTACAATTCAGTCATGGTTGAAGCCACCGAGTCAGGCTCTTCTTCAGATAATGGTAAAGGGGGACGTGTGGTTGAAATATCCCTGGTTCCAGAGGAAAAGAAATTGATCTTTGAAAAGAGACTTGAGCATGTCCGGGCATCTGCTGTTAAATCACCGGGTGCTAGTGCTCATTCTTCTCAGTTGCCCGTCGCGAAAACACAAAAACATATTGAGGTTGCTACTGTGGAATCAAACATCAAACCCACTTTGCCAAAGAAAGTTGGATCCCAAACATTAAAAGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACTCCACCATCTATATCTTCTTGCACAATTGGCAAAGTTTTGGAGAAGGAGAAGAAAATTCTTGCAGGAAGTAGGGTAGCAAATAAAGTGACATCATCTAAGGCAGGACGCAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGAAATAAGGTAACCAAGTTATCTAGAAGTGCCTCCCGTTCTGTTAAACCAGTTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGGGGATAATGATCCCAGTAAAAAGAAGTTAATATGCGAGAGGTGTCACTGTGCATTGAATAGTGCAGCTAAAGACTCCAAGAAAGGCTCTGCATCTCAGTTTAGTGCTTTTAGTAGTGATGTAAACATAACCAATCCAAAATCTGGTGGTAACAAAACAGGAATCAATGTGGATAGCAAGGCGTCTGATGTTAAAGTAAAAAGAAATGCAAGGGTACGAGATAAGGGTGAATTTTCGCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACGACGAGTATTATAAGTGATGATAGCAATGGGCATGGATCAAGTACTGGTAACAGACCTCATATGTCAAAAGATTTTAGGTGGGAAGCCATACGCAATGCACAATTGCAGCATGGGGTCCTTAGCTTGCGGCATTTTAATCTTCTAAAGAAGCTTGGTTGTGGGGACATTGGAACAGTGTATCTTGCCGAGCTAACTGACACTCAGTGCCTATTTGCCATTAAGGTCATGGACAACGAGTTTCTAGCAAGACGGAAGAAAATGCCTAGAGCACAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAGTTTACTACAGATAATCTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGGAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTTCTGCTTGCTTTGGAGTACTTACACATGCTTGGAGTTATTTATCGAGACTTGAAACCGGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTTTCGCTTAGGTGCACGGTCAATCCAACACTCCTGAAGTCGTCTTCCTTCAATGCAGACTTGGTGAAAACATCAGGTCCCTGTACAGATTCTAGTTGTGCTGAACCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCTAAAACAAGGAAGTCAAAACCTGACCTCACAACACAGATCAGGTCGTTACCCCAACTCGTTGCCGAACCCACTGATGCACGTTCGAATTCCTTTGTTGGCACTCACGAATATTTGGCTCCTGAGATCATTAAAGGAGAGGGTCATGGAGCTGCAGTTGATTGGTGGACGTTTGGTGTTTTTCTCTACGAGCTTCTGTATGGCAGAACCCCTTTCAAGGGTTCCAACAATGATGAAACATTGTCCAATGTAATAATGCAAGGCCTCAGTTTTCCCGACACCCCAATCGTTAGTTTCCAAGCAAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCCGAAAATCGTTTCGGGACAGAGAAAGGAGCTGCGGAAATCAAACAGCACCCCTTCTTCGAGGGGCTAAACTGGGCATTAATCCGGTGTGCAGTTCCTCCAGAACTTCCAGATTTATGTGATGTGGACATTACAAGTATGATTGCTCAACAAAACAAATTCAGGTATTTGGAAAGTAAGTCCACTGGAGAACACCTTGAGTTTGAATTGTTTTAG | 2604 | 42.74 | MGSGTCEIVEASEEIKPVQSKSGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVDVNTLRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAATKRSSKLSSSSRISEAGRIKTLYNSVMVEATESGSSSDNGKGGRVVEISLVPEEKKLIFEKRLEHVRASAVKSPGASAHSSQLPVAKTQKHIEVATVESNIKPTLPKKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILAGSRVANKVTSSKAGRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNGDNDPSKKKLICERCHCALNSAAKDSKKGSASQFSAFSSDVNITNPKSGGNKTGINVDSKASDVKVKRNARVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGSSTGNRPHMSKDFRWEAIRNAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELTDTQCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTTDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKPDLTTQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNDETLSNVIMQGLSFPDTPIVSFQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDVDITSMIAQQNKFRYLESKSTGEHLEFELF* | 868 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23445828 | 23450740 | - | CsaV3_6G040500.1 | Csa06g02664 | 534291 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 406 | 423 | - | - | |
Csa06g02664 | 867 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 3 | 867 | - | - | |
Csa06g02664 | 867 | Gene3D | Transferase(Phosphotransferase) domain 1 | 563 | 632 | - | - | |
Csa06g02664 | 867 | Pfam | Protein kinase domain | 713 | 816 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g02664 | 867 | Pfam | Protein kinase domain | 484 | 634 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g02664 | 867 | SMART | serkin_6 | 483 | 816 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 330 | 347 | - | - | |
Csa06g02664 | 867 | PANTHER | FLIPPASE KINASE 1-RELATED | 3 | 867 | - | - | |
Csa06g02664 | 867 | CDD | STKc_phototropin_like | 481 | 837 | - | - | |
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 273 | 348 | - | - | |
Csa06g02664 | 867 | Gene3D | Transferase(Phosphotransferase) domain 1 | 709 | 834 | - | - | |
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 273 | 313 | - | - | |
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 424 | 458 | - | - | |
Csa06g02664 | 867 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 604 | 616 | IPR008271 | GO:0004672|GO:0006468 | |
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 385 | 403 | - | - | |
Csa06g02664 | 867 | ProSiteProfiles | Protein kinase domain profile. | 483 | 816 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g02664 | 867 | Gene3D | Phosphorylase Kinase; domain 1 | 481 | 562 | - | - | |
Csa06g02664 | 867 | SUPERFAMILY | Protein kinase-like (PK-like) | 460 | 833 | IPR011009 | - | |
Csa06g02664 | 867 | MobiDBLite | consensus disorder prediction | 385 | 458 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01551 | Csa-Chr1:11109475 | Csa06g02664 | Csa-Chr6:23445828 | 0 | dispersed | |
Csa03g03977 | Csa-Chr3:34781972 | Csa06g02664 | Csa-Chr6:23445828 | 0 | dispersed | |
Csa04g02100 | Csa-Chr4:21546349 | Csa06g02664 | Csa-Chr6:23445828 | 3.67E-167 | dispersed | |
Csa06g01288 | Csa-Chr6:10775950 | Csa06g02664 | Csa-Chr6:23445828 | 1.20E-131 | dispersed | |
Csa06g02664 | Csa-Chr6:23445828 | Csa06g03433 | Csa-Chr6:28317839 | 2.59E-53 | dispersed | |
Csa07g01557 | Csa-Chr7:15913650 | Csa06g02664 | Csa-Chr6:23445828 | 3.82E-73 | transposed | |
Csa06g01287 | Csa-Chr6:10764787 | Csa06g02664 | Csa-Chr6:23445828 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78403 | PF00069 | Pkinase | 2.00E-36 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02664 | - | K08286 | csv:101210027 | 1663.66 |