Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02669 ATGGACGTTCTTGCTGCCTTCGATGAGGCCATCGCTGACGGCGTCGATTTAATTTCCGTCTCCATAGGTTCCCCGCCGATGGATTTCTTCAGGGACGGCCAGGCGATTGGGGCTTTTCATGCCATGAAGAAGGGGATTCTGACTACCACCGCTGCCGGCAACGACGGCCCTGAATTGTTCACCGTAGAGAATGTGGCGCCGTGGATTATGACCGTGGCTGCAACGGGCATTGATAGAGGATTCGTCACCGCTTTCGAACTCGGTAATGGCAACAAATTTACTGGAGGTTCCATCAACACTTTCTCTCCACAGAAACAAATGCACTCTCTTACAAGCGGGGCCAAAGCCGCCTTCAACAATGGCACACCCCATCAAGGAAATGCAAGTGCTTGTGATCCAAATGCTATGAACCAAAGCAAGGTGAAGGGAAAGATTGTATATTGCTTGAAAACTTATACAGATCCCTCCATCAAATCCTTAGGAGGCACTGGAGTCATTCAACTCACTCAACAACAAACCGATTATTCCTCTATTTTGCTTCTTCCTGGGGCTACCATCCCTTCTGTTTCTGGCAAATACATTGATCTTTATATCAATTCCACCAAGAATCCTAAAGCTGTCATTTATAAGAGTGAAACTGTCAAAATTGATGCTCCTTTTGTTGCTTCTTTCTCTTCTAGAGGGCCTCAGCGTATCAGTAGTAACATTCTCAAGCCTGATCTTTCTGCACCAGGGATAGACATCTTGGCTGCTTATACAAAACTAGCAACTTTGACAGGAGATACGTCAGACAGTAGATATAGTTTTTTCACTGTAATGTCAGGTACATCCATGGCATGTTCTCATGCCACGGCAGCTGCAGCGTATGTTAAGTCATTTCACCCTGACTGGTCTCCGGCTGCAGTCAAGTCCGCTCTCATGACCACTGCAACCCCAATGAAGATCAAATCTGAAGACGTTGTGCTCGGCTCTGGAGCAGGACAAATAAATCCAACTAAGGCAGTGCATCCAGGCCTTGTTTATAATATCTCGTTCGACTCCTACATCTCATTCCTCTGCAAAGAAGGCTACAATAACACAACAATTGGCCTACTTGGTGGTAGCAAAAAGTATAATTGCTCCAAAATCAAGCCTGCACAAGGAACCGATGGTCTCAACTACCCTACAATGCACAAACAGCTCTCAGATCCTAGTTCTGCCATTGAGGCGGTCTTTTATCGAACAGTAACTCATGTTGGGTATGGTGCATCGTTGTACAGGGCAAATATATCATCCCCAGATAGCCTATCTGTCAAAGTTTTTCCAGACACCCTAAATTTTGTTAAGTTACATGAAACAAGGACGTTTAAAGTTGTAGTGAAGGGCAAACCTATGCCAAAAGGAACACAGATTCTATCAGCTTTACTTGAATGGACCGACTCTAAACACATAGTTAGAAGCAATATCCTTATCTACAGGGAAAAGATCTAA 1470 44.83 MDVLAAFDEAIADGVDLISVSIGSPPMDFFRDGQAIGAFHAMKKGILTTTAAGNDGPELFTVENVAPWIMTVAATGIDRGFVTAFELGNGNKFTGGSINTFSPQKQMHSLTSGAKAAFNNGTPHQGNASACDPNAMNQSKVKGKIVYCLKTYTDPSIKSLGGTGVIQLTQQQTDYSSILLLPGATIPSVSGKYIDLYINSTKNPKAVIYKSETVKIDAPFVASFSSRGPQRISSNILKPDLSAPGIDILAAYTKLATLTGDTSDSRYSFFTVMSGTSMACSHATAAAAYVKSFHPDWSPAAVKSALMTTATPMKIKSEDVVLGSGAGQINPTKAVHPGLVYNISFDSYISFLCKEGYNNTTIGLLGGSKKYNCSKIKPAQGTDGLNYPTMHKQLSDPSSAIEAVFYRTVTHVGYGASLYRANISSPDSLSVKVFPDTLNFVKLHETRTFKVVVKGKPMPKGTQILSALLEWTDSKHIVRSNILIYREKI* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23476720 23482090 - CsaV3_6G040550.1 Csa06g02669 534296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02669 489 ProSiteProfiles Serine proteases, subtilase domain profile. 1 335 - -
Csa06g02669 489 Pfam Subtilase family 2 319 IPR000209 GO:0006508|GO:0008236
Csa06g02669 489 Gene3D Peptidase S8/S53 domain 2 348 IPR036852 GO:0004252|GO:0006508
Csa06g02669 489 CDD PA_subtilisin_like 87 208 - -
Csa06g02669 489 Gene3D - 78 214 - -
Csa06g02669 489 Gene3D - 352 486 - -
Csa06g02669 489 Pfam Fibronectin type-III domain 385 484 IPR041469 -
Csa06g02669 489 SUPERFAMILY Subtilisin-like 2 335 IPR036852 GO:0004252|GO:0006508
Csa06g02669 489 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 486 IPR045051 -
Csa06g02669 489 PANTHER CUCUMISIN PROTEIN 1 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02669 Csa-Chr6:23476720 Csa05g01060 Csa-Chr5:10608689 7.60E-157 dispersed
Csa03g03404 Csa-Chr3:30713657 Csa06g02669 Csa-Chr6:23476720 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02669 - - csv:101207592 959.903