Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02676 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGCGCCAATAACTGCGGATTCTTCGGTAGCCCAGCTACTATGGATCTCTGCTCCAAATGTTATAGAGATTTCCGTCTTAAAGAACAAGAACAAGCCTCCACAAAATCAACCATCGAAGCCGCTCTCTCAGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCTGTGCCTCCTGTTGTCGCCTTGTCCCTGCCGGACACCACCACAGATCTGACCATCCCTCCCCTTGCGGTGGTTGGATCTGATGTCACAAACCCGAACCCAAGCCCGAGCCCGAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGTGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATTGCTCGAGCAAACCCCGTCGTCAAAGCCGACAAACTAGAGAGGATTTAA 522 53.45 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVALSLPDTTTDLTIPPLAVVGSDVTNPNPSPSPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23523782 23525857 + CsaV3_6G040620.1 Csa06g02676 534303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02676 173 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Csa06g02676 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Csa06g02676 173 MobiDBLite consensus disorder prediction 47 77 - -
Csa06g02676 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Csa06g02676 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Csa06g02676 173 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 173 - -
Csa06g02676 173 Gene3D - 1 69 - -
Csa06g02676 173 MobiDBLite consensus disorder prediction 48 65 - -
Csa06g02676 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Csa06g02676 173 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Csa06g02676 173 Gene3D - 98 169 IPR035896 -
Csa06g02676 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 173 - -
Csa06g02676 173 SUPERFAMILY AN1-like Zinc finger 102 168 IPR035896 -
Csa06g02676 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01638 Csa-Chr3:12248109 Csa06g02676 Csa-Chr6:23523782 2.51E-30 dispersed
Csa03g01639 Csa-Chr3:12253010 Csa06g02676 Csa-Chr6:23523782 9.97E-13 dispersed
Csa04g01405 Csa-Chr4:14082659 Csa06g02676 Csa-Chr6:23523782 2.79E-43 dispersed
Csa05g00359 Csa-Chr5:2277983 Csa06g02676 Csa-Chr6:23523782 4.51E-48 dispersed
Csa06g01308 Csa-Chr6:10944640 Csa06g02676 Csa-Chr6:23523782 1.23E-54 dispersed
Csa06g02676 Csa-Chr6:23523782 Csa07g02033 Csa-Chr7:19753087 1.23E-37 dispersed
Csa06g02676 Csa-Chr6:23523782 Csa07g02032 Csa-Chr7:19747569 7.16E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02676 - - csv:101211758 301.982