Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02714 ATGCGCGGTGCTTCTCGAGCTCCGAAGCCATCGGAGCCACTGCCTCTGCCTCACTCCCATACTGCCCAGATCCTACCACCTCTCAACCGTCACCTCGCTTTCGACTCTCATAACCCGCCCTTTGTTCCACCTGGTCATTATTACCATTTCGCCGGCGACGCTTCTTCCAATGCTATTGATAAACCTGATACCATTGTTGTTAAACCTCTCCTCAGTAGTGCTAAATCAAAGCAGAAGGGTGTCATGTATAACAATATGGTTAAATCGAATGACTACATTCATGACGAGGGATCTTCAAAAGATGCTCTTAGTTGTGTTCAGACACCTGTGTCTGCAAAAGGAGGAAGGGTAAACAATAGGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCACTTACTCCTGCCGGAAATTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGACGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACCAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGATGCTTCTATGTTGCAGGTGGATGTTGAAAATCTTTCGTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGATAATATCCAGAAGTGGCTGTTTGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATGGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTCTTATTATCTGATGTCAATACTCAAAGGCCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGTGA 1437 41.54 MRGASRAPKPSEPLPLPHSHTAQILPPLNRHLAFDSHNPPFVPPGHYYHFAGDASSNAIDKPDTIVVKPLLSSAKSKQKGVMYNNMVKSNDYIHDEGSSKDALSCVQTPVSAKGGRVNNRSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDDNIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEMEPQAHLSQHSSSCDVNGSNEFPGGMMKILPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLLSDVNTQRPRLGSPHSETAEAPSDVNLRQR* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23777642 23785067 - CsaV3_6G041000.1 Csa06g02714 534341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02714 478 SMART E2F_TDP_2 151 216 IPR003316 GO:0005667|GO:0006355
Csa06g02714 478 Pfam E2F/DP family winged-helix DNA-binding domain 153 216 IPR003316 GO:0005667|GO:0006355
Csa06g02714 478 MobiDBLite consensus disorder prediction 453 478 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 454 478 - -
Csa06g02714 478 Gene3D - 223 333 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 376 394 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 108 144 - -
Csa06g02714 478 PANTHER TRANSCRIPTION FACTOR E2F 14 462 IPR015633 GO:0000978|GO:0006357
Csa06g02714 478 SUPERFAMILY Winged helix DNA-binding domain 151 214 IPR036390 -
Csa06g02714 478 CDD E2F_DD 232 333 IPR032198 GO:0046983
Csa06g02714 478 Pfam E2F transcription factor CC-MB domain 232 332 IPR032198 GO:0046983
Csa06g02714 478 Gene3D - 145 219 IPR036388 -
Csa06g02714 478 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 14 462 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g02714 478 Coils Coil 236 263 - -
Csa06g02714 478 SUPERFAMILY E2F-DP heterodimerization region 230 333 IPR037241 -
Csa06g02714 478 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00185 Csa-Chr1:1197260 Csa06g02714 Csa-Chr6:23777642 7.15E-06 dispersed
Csa06g02465 Csa-Chr6:21931322 Csa06g02714 Csa-Chr6:23777642 8.98E-167 dispersed
Csa06g02714 Csa-Chr6:23777642 Csa01g00820 Csa-Chr1:5162868 9.04E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32098 PF16421 E2F_CC-MB 5.40E-33 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02714 K06620 - csv:101212480 812.757