Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02714 | ATGCGCGGTGCTTCTCGAGCTCCGAAGCCATCGGAGCCACTGCCTCTGCCTCACTCCCATACTGCCCAGATCCTACCACCTCTCAACCGTCACCTCGCTTTCGACTCTCATAACCCGCCCTTTGTTCCACCTGGTCATTATTACCATTTCGCCGGCGACGCTTCTTCCAATGCTATTGATAAACCTGATACCATTGTTGTTAAACCTCTCCTCAGTAGTGCTAAATCAAAGCAGAAGGGTGTCATGTATAACAATATGGTTAAATCGAATGACTACATTCATGACGAGGGATCTTCAAAAGATGCTCTTAGTTGTGTTCAGACACCTGTGTCTGCAAAAGGAGGAAGGGTAAACAATAGGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCACTTACTCCTGCCGGAAATTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGACGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACCAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGATGCTTCTATGTTGCAGGTGGATGTTGAAAATCTTTCGTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGATAATATCCAGAAGTGGCTGTTTGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATGGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTCTTATTATCTGATGTCAATACTCAAAGGCCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGTGA | 1437 | 41.54 | MRGASRAPKPSEPLPLPHSHTAQILPPLNRHLAFDSHNPPFVPPGHYYHFAGDASSNAIDKPDTIVVKPLLSSAKSKQKGVMYNNMVKSNDYIHDEGSSKDALSCVQTPVSAKGGRVNNRSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDDNIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEMEPQAHLSQHSSSCDVNGSNEFPGGMMKILPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLLSDVNTQRPRLGSPHSETAEAPSDVNLRQR* | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23777642 | 23785067 | - | CsaV3_6G041000.1 | Csa06g02714 | 534341 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02714 | 478 | SMART | E2F_TDP_2 | 151 | 216 | IPR003316 | GO:0005667|GO:0006355 | |
Csa06g02714 | 478 | Pfam | E2F/DP family winged-helix DNA-binding domain | 153 | 216 | IPR003316 | GO:0005667|GO:0006355 | |
Csa06g02714 | 478 | MobiDBLite | consensus disorder prediction | 453 | 478 | - | - | |
Csa06g02714 | 478 | MobiDBLite | consensus disorder prediction | 454 | 478 | - | - | |
Csa06g02714 | 478 | Gene3D | - | 223 | 333 | - | - | |
Csa06g02714 | 478 | MobiDBLite | consensus disorder prediction | 376 | 394 | - | - | |
Csa06g02714 | 478 | MobiDBLite | consensus disorder prediction | 108 | 144 | - | - | |
Csa06g02714 | 478 | PANTHER | TRANSCRIPTION FACTOR E2F | 14 | 462 | IPR015633 | GO:0000978|GO:0006357 | |
Csa06g02714 | 478 | SUPERFAMILY | Winged helix DNA-binding domain | 151 | 214 | IPR036390 | - | |
Csa06g02714 | 478 | CDD | E2F_DD | 232 | 333 | IPR032198 | GO:0046983 | |
Csa06g02714 | 478 | Pfam | E2F transcription factor CC-MB domain | 232 | 332 | IPR032198 | GO:0046983 | |
Csa06g02714 | 478 | Gene3D | - | 145 | 219 | IPR036388 | - | |
Csa06g02714 | 478 | PANTHER | E2F TRANSCRIPTION FACTOR 3-RELATED | 14 | 462 | - | - | |
Csa06g02714 | 478 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Csa06g02714 | 478 | Coils | Coil | 236 | 263 | - | - | |
Csa06g02714 | 478 | SUPERFAMILY | E2F-DP heterodimerization region | 230 | 333 | IPR037241 | - | |
Csa06g02714 | 478 | MobiDBLite | consensus disorder prediction | 374 | 394 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00185 | Csa-Chr1:1197260 | Csa06g02714 | Csa-Chr6:23777642 | 7.15E-06 | dispersed | |
Csa06g02465 | Csa-Chr6:21931322 | Csa06g02714 | Csa-Chr6:23777642 | 8.98E-167 | dispersed | |
Csa06g02714 | Csa-Chr6:23777642 | Csa01g00820 | Csa-Chr1:5162868 | 9.04E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32098 | PF16421 | E2F_CC-MB | 5.40E-33 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02714 | K06620 | - | csv:101212480 | 812.757 |