Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02714 ATGCGCGGTGCTTCTCGAGCTCCGAAGCCATCGGAGCCACTGCCTCTGCCTCACTCCCATACTGCCCAGATCCTACCACCTCTCAACCGTCACCTCGCTTTCGACTCTCATAACCCGCCCTTTGTTCCACCTGGTCATTATTACCATTTCGCCGGCGACGCTTCTTCCAATGCTATTGATAAACCTGATACCATTGTTGTTAAACCTCTCCTCAGTAGTGCTAAATCAAAGCAGAAGGGTGTCATGTATAACAATATGGTTAAATCGAATGACTACATTCATGACGAGGGATCTTCAAAAGATGCTCTTAGTTGTGTTCAGACACCTGTGTCTGCAAAAGGAGGAAGGGTAAACAATAGGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCACTTACTCCTGCCGGAAATTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGACGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACCAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGATGCTTCTATGTTGCAGGTGGATGTTGAAAATCTTTCGTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGATAATATCCAGAAGTGGCTGTTTGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATGGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTCTTATTATCTGATGTCAATACTCAAAGGCCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGTGA 1437 41.54 MRGASRAPKPSEPLPLPHSHTAQILPPLNRHLAFDSHNPPFVPPGHYYHFAGDASSNAIDKPDTIVVKPLLSSAKSKQKGVMYNNMVKSNDYIHDEGSSKDALSCVQTPVSAKGGRVNNRSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDDNIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEMEPQAHLSQHSSSCDVNGSNEFPGGMMKILPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLLSDVNTQRPRLGSPHSETAEAPSDVNLRQR* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23777642 23785067 - CsaV3_6G041000.1 Csa06g02714 534341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02714 478 SMART E2F_TDP_2 151 216 IPR003316 GO:0005667|GO:0006355
Csa06g02714 478 Pfam E2F/DP family winged-helix DNA-binding domain 153 216 IPR003316 GO:0005667|GO:0006355
Csa06g02714 478 MobiDBLite consensus disorder prediction 453 478 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 454 478 - -
Csa06g02714 478 Gene3D - 223 333 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 376 394 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 108 144 - -
Csa06g02714 478 PANTHER TRANSCRIPTION FACTOR E2F 14 462 IPR015633 GO:0000978|GO:0006357
Csa06g02714 478 SUPERFAMILY Winged helix DNA-binding domain 151 214 IPR036390 -
Csa06g02714 478 CDD E2F_DD 232 333 IPR032198 GO:0046983
Csa06g02714 478 Pfam E2F transcription factor CC-MB domain 232 332 IPR032198 GO:0046983
Csa06g02714 478 Gene3D - 145 219 IPR036388 -
Csa06g02714 478 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 14 462 - -
Csa06g02714 478 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g02714 478 Coils Coil 236 263 - -
Csa06g02714 478 SUPERFAMILY E2F-DP heterodimerization region 230 333 IPR037241 -
Csa06g02714 478 MobiDBLite consensus disorder prediction 374 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02714 K06620 E2F3; transcription factor E2F3 - csv:101212480 812.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00185 Csa-Chr1:1197260 Csa06g02714 Csa-Chr6:23777642 7.15E-06 dispersed
Csa06g02465 Csa-Chr6:21931322 Csa06g02714 Csa-Chr6:23777642 8.98E-167 dispersed
Csa06g02714 Csa-Chr6:23777642 Csa01g00820 Csa-Chr1:5162868 9.04E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32098 PF16421 E2F_CC-MB 5.40E-33 No_clan Csa TF