Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02721 ATGGGAGTTCCACAGGCCATGGAAATTCTCACCGAGAGAGCCGCACTTGTTCGAGAGTCGCTTCAGAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTCGGTTCTTTCGACTACCGTCTCTCCGCCCTCGAAACCGCAATGCGCCCCACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTGGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGACCACATGAGGACTTAGAGATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTATTGGGAACAAAAATTTCAAAAGTAACGAAGCTATTCTTATCCACACAAGCAACTTGCTTGTTAAAGCCATTTCAAAGCTAGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTTGATTGCCTCCCCAACAATTTGCGTCCATCATCAGCATCTGCACACCATGGTGATAGTGGTAGCAAAATTAACTCTGACCAACAGAACAAAAGCTTAGAAGCTGCCGTCTTCATTCCACCAACTCTAATTCCGCCCAGGGTTCTTCCATTGTTGCATGACTTGGCTCAACAAATGATTCAGGCTGGTCATCAGCAGCAGCTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTTACCAAGGATGATGTCCAGAAAATGCAGTGGGAAGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCGGTCAAACTGCTGTTTGCTGGGGAAAGGAAAATTTGTGATCAAATTTTTGACGGTGCAGACTCTCTCCAAGATCAATGCTTTGCTGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCCATTGCCAGAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGGTTGAAACACTTTTTGGAAGTAAAGCATGTATTGAAATGCGGGATTCTGCATTGAGCTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACGGCAGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATCAATTACGTCAAGTTTCTGTTTGACTACCAATCTACTTTGAAGCAGCTATTCCAAGATTTTGACGCTAGTGATCCAGATGCTCAGATAGCAGTGGTAACTACAAGAATCATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAACAATATAGGGATCCTGCACTAACTCAATTATTTCTTATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGCTGGGTGATGACTGGGTGCAGATACATCGACGGGTTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAGGCCTCAGGTAGTGGTGGTGGTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTCAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTAAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCTTACCGATCCTTCATCAAGCGTTTCGGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATACATCAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTTGAAGGCAAGACATTCAGTGAGCAAAAGCGCTAG 1917 43.66 MGVPQAMEILTERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFIGNKNFKSNEAILIHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNNLRPSSASAHHGDSGSKINSDQQNKSLEAAVFIPPTLIPPRVLPLLHDLAQQMIQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLTKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIARSKRSPEKLFVLLDMYEIMRELQSEVETLFGSKACIEMRDSALSLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQIAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRVVQQHANQYKRISWAKILQCLTVQASGSGGGSGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23807554 23815666 - CsaV3_6G041070.1 Csa06g02721 534348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02721 638 SUPERFAMILY Cullin repeat-like 76 629 IPR016159 -
Csa06g02721 638 Pfam Exo70 exocyst complex subunit 273 626 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa06g02721 638 Gene3D Exocyst complex component Exo70 75 638 - -
Csa06g02721 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 635 IPR004140 GO:0000145|GO:0006887
Csa06g02721 638 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 36 635 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02705 Csa-Chr5:27858578 Csa06g02721 Csa-Chr6:23807554 0 dispersed
Csa07g02292 Csa-Chr7:21327491 Csa06g02721 Csa-Chr6:23807554 2.53E-54 dispersed
Csa06g02721 Csa-Chr6:23807554 Csa06g02723 Csa-Chr6:23826020 0 proximal
Csa06g02721 Csa-Chr6:23807554 Csa06g02722 Csa-Chr6:23824017 1.37E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02721 K07195 - csv:105436019 1226.08