Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02722 ATGTACAGCTACCAATCTACTTTGAAGCAGCTATTCCAAGATTTTGACGCTAGTGATCCAGATGCTCAGATAGCAGTGGTAACTACAAGAATCATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAACAATATAGGGATCCTGCACTAACTCAATTATTTCTTATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGCTGGGTGATGACTGGGTGCAGATACATCGACGGGTTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAGGCCTCAGGTAGTGGTGGTGGTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTCAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGAGAGTCATTAAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCTTACCGATCCTTCATCAAGCGTTTCGGGCATGTTCCTCATTTATTTCACTTTACAATAATCTAA 582 43.13 MYSYQSTLKQLFQDFDASDPDAQIAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRVVQQHANQYKRISWAKILQCLTVQASGSGGGSGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGHVPHLFHFTII* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23824017 23825568 - CsaV3_6G041080.1 Csa06g02722 534349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02722 193 SUPERFAMILY Cullin repeat-like 2 183 IPR016159 -
Csa06g02722 193 Gene3D Exocyst complex component Exo70 1 189 - -
Csa06g02722 193 PANTHER EXOCYST COMPLEX PROTEIN EXO70 2 183 IPR004140 GO:0000145|GO:0006887
Csa06g02722 193 Pfam Exo70 exocyst complex subunit 2 186 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa06g02722 193 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 2 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02722 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:105436018 343.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g03108 Csa06g02722 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02722 Csa-Chr6:23824017 Csa05g02705 Csa-Chr5:27858578 2.25E-99 dispersed
Csa06g02721 Csa-Chr6:23807554 Csa06g02722 Csa-Chr6:23824017 1.37E-128 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g861 . . . . Bpe04g01259 . . . Cmo06g00241 Cmo14g00082 . . . . . . Cpe08g01207 . . . . . . . . . . . . . . . Cone10ag0371 . . . Csa06g02722 . Cme04g02696 . . . . . . . . . . . Cma06g00247 Cma14g00085 Car06g00217 Car14g00068 Cpe03g00070 . Bhi11g01877 . . . . . . . . . . . . . . Csa03g03108 Chy04g02218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02705 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G03540 70.7 6.0e-265 910.2
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G03540 68.9 8.8e-168 587.4
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G03540 74.7 5.3e-72 269.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G52340 79.8 1.9e-297 1018.1
Csa05g02705 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G52340 77.9 2.8e-187 652.1
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52340 80.2 7.8e-81 298.5
Csa06g02721 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.7e-175 612.8
Csa05g02705 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Csa06g02723 . 145 421 EXO70 exocyst subunit family AT5G52350 60.1 1.2e-88 324.3
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52350 64.3 2.0e-62 237.3
Csa01g02542 . 1 630 EXO70 exocyst subunit family AT5G58430 66.5 7.6e-246 846.7
Csa01g02542 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.3e-175 612.5
Csa04g00293 . 60 673 EXO70 exocyst subunit family AT5G13150 52.6 3.1e-173 605.5
Csa05g01620 . 93 705 EXO70 exocyst subunit family AT5G13990 54.3 4.1e-192 668.3
Csa03g02774 . 12 611 EXO70 exocyst subunit family AT1G72470 64.3 1.3e-213 739.6
Csa03g02774 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 3.9e-210 728.0
Csa03g02774 . 9 608 EXO70 exocyst subunit family AT3G14090 65.1 8.4e-221 763.5
Csa01g03408 . 14 651 EXO70 exocyst subunit family AT5G50380 61.9 5.6e-226 780.8
Csa01g00963 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 3.1e-224 775.0
Csa02g02314 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 4.5e-292 1000.3
Csa05g00661 . 58 601 EXO70 exocyst subunit family AT3G55150 51.7 2.2e-152 536.2
Csa05g00661 . 27 601 EXO70 exocyst subunit family AT2G39380 52.0 3.9e-157 552.0
Csa03g03213 . 27 632 EXO70 exocyst subunit family AT3G09520 54.3 4.0e-178 621.7
Csa06g01715 . 36 613 EXO70 exocyst subunit family AT5G59730 50.2 5.9e-153 538.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030296 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 2