Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02728 ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCAAGAGCATCACCAATATCGCCACCATGACACCGTCGAGATGTCCGACAACTTGCCGTCCTCAACCACGATCAATCTCAACACCTTCTTCGACGACGTGGAGTCGGTCAAGGCGGAATTAACAGAACTCGAAGGGCTCCACCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTACACAATTCCAAGGCGATTAAGGATGTTCGATCGCGAATGGAGACGGCTGTGACATTGGCTTTGAAGAAGGCTAGGTTTATCAAGGTCCGGCTGGAGGAACTGGACCGGTCGAATGAGGAGAACCGGAAGCTTCCTGGTTGTGGGTATGGATCCTCGGCGGACCGGTCGAGAACATCGGTGGTGAGCGGATTGAGGAAGAAGCTGTGTGATTCAATGGAGAGTTTTAACAGATTGAGAGAAGAGATAACGAAGACGTATAAGGAGACGATTGAACGGAGGTATTTTACAATTACAGGGGAAAATCCGGATGAGAAGACTGTTGAATTGTTGATCTCTACAGGTGAAAGTGAAACGTTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTCTGGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGTTGCACCAAGTTTTCTTGGACATGGCGGTTATGGTTCAAGCACAGGGGCAGCAGTTAGACGACATCGAAAGCCAAGTTACTCGAGCCAACTCTGCTGTCAAGCGGGGCACGTCTCAGCTACAAACTGCAAGGTACTATCAAAAAAACACTCGCAAATGGATCTGCATAGGCGTCAGTGTTGGTGCTACAGTCATTCTCATCATTATAATCGTTGCTATCGCCCGCGCGATAAAGAAAAAGGATGGTTAG 927 47.57 MNDLFSTDSFRQEHHQYRHHDTVEMSDNLPSSTTINLNTFFDDVESVKAELTELEGLHRSLQNSHEQSKTLHNSKAIKDVRSRMETAVTLALKKARFIKVRLEELDRSNEENRKLPGCGYGSSADRSRTSVVSGLRKKLCDSMESFNRLREEITKTYKETIERRYFTITGENPDEKTVELLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFLDMAVMVQAQGQQLDDIESQVTRANSAVKRGTSQLQTARYYQKNTRKWICIGVSVGATVILIIIIVAIARAIKKKDG* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23853120 23854314 + CsaV3_6G041140.1 Csa06g02728 534355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02728 308 CDD SNARE_syntaxin1-like 206 268 - -
Csa06g02728 308 SMART tSNARE_6 202 269 IPR000727 -
Csa06g02728 308 Coils Coil 44 64 - -
Csa06g02728 308 CDD SynN 40 194 IPR006011 GO:0016020
Csa06g02728 308 Gene3D - 202 303 - -
Csa06g02728 308 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
Csa06g02728 308 SMART SynN_4 32 158 IPR006011 GO:0016020
Csa06g02728 308 Gene3D - 37 164 - -
Csa06g02728 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Csa06g02728 308 PANTHER SYNTAXIN 15 297 IPR045242 -
Csa06g02728 308 Pfam Syntaxin 40 242 IPR006011 GO:0016020
Csa06g02728 308 Pfam SNARE domain 244 295 IPR000727 -
Csa06g02728 308 PANTHER SYNTAXIN-121 15 297 - -
Csa06g02728 308 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01182 Csa-Chr1:7322149 Csa06g02728 Csa-Chr6:23853120 2.44E-115 dispersed
Csa06g02728 Csa-Chr6:23853120 Csa06g03248 Csa-Chr6:27399246 2.75E-54 dispersed
Csa06g02728 Csa-Chr6:23853120 Csa06g02729 Csa-Chr6:23857036 0 tandem
Csa03g04004 Csa-Chr3:34985908 Csa06g02728 Csa-Chr6:23853120 1.05E-89 transposed
Csa03g03501 Csa-Chr3:31360235 Csa06g02728 Csa-Chr6:23853120 4.57E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02728 K08486 - csv:101213199 584.334