Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02729 ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCAAGAGCATCACCAATATCGCCACCATGACACCGTCGAGATGTCCGACAACTCGCCCTCCTCAACCACGATCAATCTCAACACCTTCTTCGACGACGTGGAGTCGGTCAAGGCGGAATTAACAGAACTCGAAGGGCTCCACCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTACACAATTCCAAGGCGATTAAGGATGTTCGATCGCGAATGGAGACGGCTGTGACATTGGCTTTGAAGAAGGCTAGGTTTATCAAGGTCCGGCTGGAGGAACTGGACCGGTCGAATGAGGAGAACCGGAAGCTTCCTGGTTGTGGGTATGGATCCTCGGCGGACCGGTCGAGAACATCGGTGGTGAGCGGATTGAGGAAGAAGCTGTGTGATTCAATGGAGAGTTTTAACAGATTGAGAGAAGAGATAACGAAGACGTATAAGGAGACGATTGAACGGAGGTATTTTACAATTACAGGGGAAAATCCGGATGAGAAGACTGTTGAATTGTTGATCTCTACAGGTGAAAGTGAAACGTTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTCTGGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGTTGCACCAAGTTTTTTTGGACATGGCGGTTATGGTTCAAACACAGGGGCAGCAGTTAGACGACATCGAAAGCCAAGTTACTCGAGCCAACTCTGCTGTCAGGCGGGGCACGTCTCAGCTACAAACTGCAAGATACTATCAAAAGAACACTCGCAAATGGATCTGCATAGGCATTAGTATTGTTGCAGCCATTGTCATCATCATTATCGTTGCTGTCGTCCTCTCAAATAAGTAA 912 47.15 MNDLFSTDSFRQEHHQYRHHDTVEMSDNSPSSTTINLNTFFDDVESVKAELTELEGLHRSLQNSHEQSKTLHNSKAIKDVRSRMETAVTLALKKARFIKVRLEELDRSNEENRKLPGCGYGSSADRSRTSVVSGLRKKLCDSMESFNRLREEITKTYKETIERRYFTITGENPDEKTVELLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFLDMAVMVQTQGQQLDDIESQVTRANSAVRRGTSQLQTARYYQKNTRKWICIGISIVAAIVIIIIVAVVLSNK* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23857036 23858329 + CsaV3_6G041150.1 Csa06g02729 534356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02729 303 Gene3D - 37 164 - -
Csa06g02729 303 SMART tSNARE_6 202 269 IPR000727 -
Csa06g02729 303 PANTHER SYNTAXIN 14 297 IPR045242 -
Csa06g02729 303 PANTHER SYNTAXIN-121 14 297 - -
Csa06g02729 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Csa06g02729 303 CDD SNARE_syntaxin1-like 206 268 - -
Csa06g02729 303 Pfam SNARE domain 244 295 IPR000727 -
Csa06g02729 303 Coils Coil 44 64 - -
Csa06g02729 303 Gene3D - 202 301 - -
Csa06g02729 303 CDD SynN 40 194 IPR006011 GO:0016020
Csa06g02729 303 SMART SynN_4 32 158 IPR006011 GO:0016020
Csa06g02729 303 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
Csa06g02729 303 Pfam Syntaxin 40 242 IPR006011 GO:0016020
Csa06g02729 303 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03501 Csa-Chr3:31360235 Csa06g02729 Csa-Chr6:23857036 1.62E-146 dispersed
Csa03g04004 Csa-Chr3:34985908 Csa06g02729 Csa-Chr6:23857036 6.10E-90 dispersed
Csa06g02729 Csa-Chr6:23857036 Csa06g03248 Csa-Chr6:27399246 4.17E-56 dispersed
Csa06g02728 Csa-Chr6:23853120 Csa06g02729 Csa-Chr6:23857036 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02729 K08486 - csv:101213443 560.451