Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02730 | ATGAACAACGGCACGGCCGAAACCGGCGGATTTCTCTCCTCTTCCAACATCGGCGGTTTCGGCTACGGAATTGGCGTCTCCTTAGGCCTTTTGATTCTCATCACTACCATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCGTTCAGAGGACTCCTCCCAATCGCTCCCCGCCCCAAGCGGTGGGGGAAATGGATTCCGTCGTTGTCGACATCGGACTCGATCAGGAGACGATAACGAGTTATCCCAAATTACTGTATTCTGAAGCGAAACTTCAGAAGAACGATTCGACTGCTTCTTGTTGTTCAATCTGTTTGGCTGATTATAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTTAGACTTCATCCCACTTGTCCGGTTTGCCGGACGTCGCCGATTCCTACGCCGTTGTCGACTCCTCTAGCGGAGCAAGTTCCATTAGCAAGCCGGCGCGATTGA | 519 | 51.83 | MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPNRSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD* | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23860220 | 23861252 | + | CsaV3_6G041160.1 | Csa06g02730 | 534357 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02730 | 172 | ProSiteProfiles | Zinc finger RING-type profile. | 107 | 149 | IPR001841 | - | |
Csa06g02730 | 172 | PANTHER | RING-H2 FINGER PROTEIN ATL70-LIKE | 4 | 170 | - | - | |
Csa06g02730 | 172 | SUPERFAMILY | RING/U-box | 83 | 154 | - | - | |
Csa06g02730 | 172 | SMART | ring_2 | 107 | 148 | IPR001841 | - | |
Csa06g02730 | 172 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 4 | 170 | IPR045899 | - | |
Csa06g02730 | 172 | CDD | RING-H2_PA-TM-RING | 106 | 149 | - | - | |
Csa06g02730 | 172 | Pfam | Ring finger domain | 107 | 149 | IPR001841 | - | |
Csa06g02730 | 172 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 153 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00658 | Csa-Chr4:4416124 | Csa06g02730 | Csa-Chr6:23860220 | 1.09E-20 | dispersed | |
Csa06g02730 | Csa-Chr6:23860220 | Csa02g02176 | Csa-Chr2:19593571 | 2.99E-21 | dispersed | |
Csa03g00856 | Csa-Chr3:7210003 | Csa06g02730 | Csa-Chr6:23860220 | 1.76E-31 | transposed | |
Csa03g03507 | Csa-Chr3:31398323 | Csa06g02730 | Csa-Chr6:23860220 | 1.02E-51 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02730 | - | - | csv:101218618 | 323.939 |