Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02730 ATGAACAACGGCACGGCCGAAACCGGCGGATTTCTCTCCTCTTCCAACATCGGCGGTTTCGGCTACGGAATTGGCGTCTCCTTAGGCCTTTTGATTCTCATCACTACCATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCGTTCAGAGGACTCCTCCCAATCGCTCCCCGCCCCAAGCGGTGGGGGAAATGGATTCCGTCGTTGTCGACATCGGACTCGATCAGGAGACGATAACGAGTTATCCCAAATTACTGTATTCTGAAGCGAAACTTCAGAAGAACGATTCGACTGCTTCTTGTTGTTCAATCTGTTTGGCTGATTATAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTTAGACTTCATCCCACTTGTCCGGTTTGCCGGACGTCGCCGATTCCTACGCCGTTGTCGACTCCTCTAGCGGAGCAAGTTCCATTAGCAAGCCGGCGCGATTGA 519 51.83 MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPNRSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23860220 23861252 + CsaV3_6G041160.1 Csa06g02730 534357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02730 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Csa06g02730 172 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 170 - -
Csa06g02730 172 SUPERFAMILY RING/U-box 83 154 - -
Csa06g02730 172 SMART ring_2 107 148 IPR001841 -
Csa06g02730 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 170 IPR045899 -
Csa06g02730 172 CDD RING-H2_PA-TM-RING 106 149 - -
Csa06g02730 172 Pfam Ring finger domain 107 149 IPR001841 -
Csa06g02730 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 153 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00658 Csa-Chr4:4416124 Csa06g02730 Csa-Chr6:23860220 1.09E-20 dispersed
Csa06g02730 Csa-Chr6:23860220 Csa02g02176 Csa-Chr2:19593571 2.99E-21 dispersed
Csa03g00856 Csa-Chr3:7210003 Csa06g02730 Csa-Chr6:23860220 1.76E-31 transposed
Csa03g03507 Csa-Chr3:31398323 Csa06g02730 Csa-Chr6:23860220 1.02E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02730 - - csv:101218618 323.939