Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02735 ATGAACAACGGCAACGCTCGGAAAAGTCGACCGCCCCCGCACCACCCATCCCCGGCCCCACCGCCAAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAGTCTTCTCGATGAGGACGCTCTTATCCTCCGCGACATTGAGGAGCGTCAGGCCCTTGCTTCCCGGATTTCGAAATGGGCTCGTCCACCTCTTTCCCAGGATTATCTGTCACAGTCGAAGAGCATCGTGTTCCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAAGGAACTGTTGCCGAATTTGTCTGGCCCAGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGCTGCCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTTCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAATAAAGCACCTAACTTTGTACGTCGCATTGAGTTGGTGCAAAGGAGAAGTATTATGTATTACCAGCAGCAGACTTTTCAATCGTTTCTTAAAATTGTAGTTGCACTCCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGAGGGCTTTGGTATGAAAAGCTTCATGACGTATGAAAGCAACGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTTGGAAAATATAAGAAAACTGTTAGAAGTTTATCATATTGCCAATTGGAGTTCGATTGCTTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGATCAACCTTTTGTTCGGAATGTCATGACCCTTAACACTTGCTCTCCTATCGCGGGTGTTGACGTCTTATCATTTGATACAGAGCGTGATGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATACAACATCTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTAAAAATACCAGAATTTCCATTATTGGGTCGCATCAGGAACAGCAAAGTCCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGGAGAGTTCAATTTGATTTACTTCAGGTTATGCAACGAGATTATAAATTAAGTTCATATTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACAAGGAGACGTCTTGCTGTGTATTGTTTAAAGGATGCGTATCTTCCACAGCGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTAATCCTGCCATCTTTTAATTTCGTAGTCACTCCTGTTGATCCAATACAAAGAATTATTGACAATTGTAGGAGTTTTTTCCAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAAAAACCTTGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCAAGGGCTGGGTTCTATGAAAAGCCCATTGCTACACTGGATTTTGCCTCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGACGCTTGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTGGAAGAACTATTGACGGCACGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGACCCTTTTGAGAAGGCTGTGTTGGATGGCCGACAGCTAGCGCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCCACCGTTGGTCAGTTGCCTTGTTTAGAAATATCATCAAGTGTGACAAGCTATGGTCGGCAAATGATTGAACACACAAAGAAGCTTGTGGAAGATAAATTTACAACGCTTGGGGGATATAAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGGTCTTGGGGAGGGAAGCAGCCGACTATATCAGTGGTACTTTCATAAAACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATATGCTGGTTTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATTGATAGAGATGTTCCTGGGGCAGTCCAATATGTGAAGAACACAATTTCAGATCTTCTTATGAACCGTGTGGATTTATCACTCTTAGTTATCACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATCGAGTACCTTATGTTATCGTTAAAGCAGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCGATAGACCCTCAGTATTATCTTGAGAATCAGATCAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAACGCCAGCAAGGAACTTCTACATGGAAGTCACACAAGATCAATTTTTATCTCTACTCCGTCAAACAGTGGTATAATGAAATTTGCTAAGAAACAGCTTACCTGCATTGGCTGCAAGGCTCTACTAGGCAAGTCAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTGTACTGCAAAGCGGTTGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGGTTTCAGTGCAGAATTGGGAAGCAAAATGTCAACCAAAATCTTTGA 3303 42.45 MNNGNARKSRPPPHHPSPAPPPKHQALSQEEDFVDEDVFLDESLLDEDALILRDIEERQALASRISKWARPPLSQDYLSQSKSIVFQQLEIDYVIGESHKELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPSGMGPDDISLFHRTLEARMKEVNRNNKAPNFVRRIELVQRRSIMYYQQQTFQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRSLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGEDQPFVRNVMTLNTCSPIAGVDVLSFDTERDVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIPEFPLLGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVILPSFNFVVTPVDPIQRIIDNCRSFFQVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDACKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYKHNAEVIYGDTDSVMVQFGVPSVEAAMVLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLGKSDKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTRFQCRIGKQNVNQNL* 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23884568 23902575 - CsaV3_6G041210.1 Csa06g02735 534362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02735 1100 Gene3D - 842 997 IPR042087 -
Csa06g02735 1100 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Csa06g02735 1100 CDD POLBc_delta 595 988 - -
Csa06g02735 1100 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 82 541 - -
Csa06g02735 1100 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 82 541 - -
Csa06g02735 1100 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 566 1091 - -
Csa06g02735 1100 CDD DNA_polB_delta_exo 290 518 - -
Csa06g02735 1100 Pfam C4-type zinc-finger of DNA polymerase delta 1024 1091 IPR025687 -
Csa06g02735 1100 Gene3D DNA Polymerase, chain B, domain 1 89 265 - -
Csa06g02735 1100 Gene3D - 294 512 IPR036397 GO:0003676
Csa06g02735 1100 Gene3D Helix hairpin bin 669 721 - -
Csa06g02735 1100 TIGRFAM pol2: DNA polymerase (pol2) 588 985 - -
Csa06g02735 1100 ProSitePatterns DNA polymerase family B signature. 768 776 IPR017964 GO:0000166|GO:0003676
Csa06g02735 1100 MobiDBLite consensus disorder prediction 1 31 - -
Csa06g02735 1100 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 566 1091 - -
Csa06g02735 1100 SMART polmehr3 293 780 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa06g02735 1100 Gene3D Palm domain of DNA polymerase 595 825 IPR023211 -
Csa06g02735 1100 PRINTS DNA-directed DNA-polymerase family B signature 766 774 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa06g02735 1100 PRINTS DNA-directed DNA-polymerase family B signature 705 717 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa06g02735 1100 PRINTS DNA-directed DNA-polymerase family B signature 613 626 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa06g02735 1100 SUPERFAMILY DNA/RNA polymerases 579 989 IPR043502 -
Csa06g02735 1100 Pfam DNA polymerase family B 566 987 IPR006134 GO:0000166|GO:0003677
Csa06g02735 1100 Pfam DNA polymerase family B, exonuclease domain 119 462 IPR006133 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00442 Csa-Chr2:3130641 Csa06g02735 Csa-Chr6:23884568 1.08E-11 dispersed
Csa02g01434 Csa-Chr2:13765648 Csa06g02735 Csa-Chr6:23884568 1.94E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02735 K02327 - csv:101219332 2070.43