Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02737 ATGGAAGGCGGTTCCATTTTCAACTCAGGAATGGCCGATTCCACCACCAGTAGGAAGAAACCACTCAGTTTGAACGATCGTCATTACCGCCTCCTTCAGGATCTTTCTGCTCCTCCAAAACCCTCTTTGGCAACCGCTGCTGACCATAGAGAAGGAGACGAAGACGTAAAACCCTCGAGAATTGGACTTGAGAATCAACATCTCTTCAGTGAAGTATCGTCCAATGTTGACGAATTTAACGATGATAAAGTTCCGCAGTCTTCAGGTGTTAATGTCGAAGAAAAGCCGACGAAGGTTAAGATCAATGGCCGACGCCGTCTGTGCAAACTCTCGTCTCGAGAAAATGATTGTTTGGATAATCCAGAGGGGTTCTATTTCAATGCACCCAATTTTTCTGGTATTACGGATTTCGATTCCCCTTCTCCGCCACCTCCACTGCCCGTTGAAAATCGCGTTAACAAGGGAAGTGAAATCAGGGATATCCTGAATGACTTGAGCGCGAGGCTTGAGCTTTTGTCTGTCGAGAAAAGGCGAGAAAAGCCAAAAAAAGTTGATTCTATAGAAGACTTCTCGGCTTCTTCCGGTGGAAAAGGGAACGAGGAAGCAAATAAAGCCGATGATCGTGAGGTTGAAAGTCTGAAGTTCTCCACTAAACCATCTAATTCCTTGTTAGGTGAAAGTGTGAAAGTTGAAAAAGCTGTCAAGACTCTCAACGTCGGTGGGAGTGGTGAGTACGGAGAAGAAATTCTTCCAAATAAGGTGAAGGTAGATGTGTTTGACGAGGGAATTCATAAAGTTGATACGTGCGGTAAAGATAGTGAACAGCTTCTAAATTTAGAGCATGGTAATAAACATGACAAAGGACGAGATAAATGCAGGAGTCAGGATGTCCAAAAAACGTACAATTCCCTAGGAAAAAGTCCTGTGTTGATAGATGAAGGAGAGGTAGAGGATGAGGATGATTGCGTAGTTCTGAATCATGAAACAAGGGATTTTAATGAAGTAAGAAGGCAAGATGGAAAATATGAAGAGAAGGATGATGGTTCTGATGGGCTTGATAAGTCTTGCGAGGATTTTATCTTGGAGGGGAAAAGCTCTGCTGGTCGCAACTCTACTTTCAAATTGCAAGGTAGAATTGCAACGATGCTGTATCCACATCAACGTGATGGGTTGCAGTGGCTGTGGTCTCTACATTGTCTGGGTAAGGGTGGAATTTTAGGTGATGACATGGGTTTAGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGTCTTTTTTATTCGCGTTTAATAAAGAGGGTCTTGGTTGTGGCTCCAAAAACTCTCCTGCCCCATTGGATTAAAGAGTTATCTGTTGTGGGTCTTTCTGAGAAGACGAGAGAATACTATGGGACGTCAGCTAAACTTCGGCAGTATGAGCTTAATTATATTCTTCAGGATAAAGGTGTTCTTCTTACAACTTACGATATTGTGAGGAATAATTCAAAGTCCTTGCAAGGAAACTGCTTCTCTGAAGACGAGGAAACTGAGGATGGAACAACATGGGATTACATGATTCTTGATGAGGGTCATCTTATAAAGAATCCTAGCACTCAAAGAGCCAAAAGTTTACTTGATATACCCAGTGCTCATCGCATAATTATAAGCGGCACACCATTGCAAAACAATCTGAAGGAACTGTGGGCCCTGTTTAATTTTTGCTGTCCTGACCTATTGGGTGACAAGCACTGGTTTAAAGAACACTACGAGTCAGCAATTCTTCGTGGAAATGACAAAAAGGCTTCTGAAAGAGATAAACGGATCGGTTCAGTGGTTGCAAAGGGTTTAAGGGAACGAATCCAACCCTACTTTTTGCGTCGTATGAAGAGTGAAGTGTTCAATGAGGATAATGATCAAGCTGCTACCAAACTTTCTAAAAAGAATGACATTATTGTTTGGCTCAGACTAACTAGTTGTCAGCGACAACTTTATGAAGCTTTCTTGAAGAGTGATTTGGCACTTTCAGCATTTGATGGCTCAGTATTGGCTGCCCTTACGATTCTTAAGAAGATATGTGATCATCCACTTCTTTTGACCAAAAGAGCTGCTGAAGAGGTATTGGAAGGAATGGAAACCGTGCTAAGCCCAGAGGATGCTGGTGTAGCAGAAAAGCTGGCAAAACGTTTAGCAGATGTAGTTGATAGGGACTTTTATGAAGTGTATGATGACAACGTCTCTTGCAAAATATCCTTCATAATGTCTTTATTGGATAATTTGGTCCCGAAGGGGCATAGTATTCTTATCTTTTCTCAAACTCGCAAGATGCTCAGTCTTCTCGAGAAATCACTGTTATCCAATGATTATGAGTTTTTGCGCATTGATGGTACTACAAAAGCCATGGACAGAGTAAAGATTGTAAATGATTTTCAAGAAGGTAGAGGAGCTTCTATATTTCTCTTGACATCTCAAGTCGGTGGTCTAGGTCTTACGCTTACCAGAGCTGATCGTGTAATTGTAGTAGATCCAGCCTGGAATCCAAGTACTGATAATCAAAGCGTTGATCGAGCATACAGAATTGGACAAAAGAAAGATGTTATAGTGTATAGATTAATGACATGTGGGACTGTTGAAGAAAAGATCTACAGAAAACAGGTTTATAAAGGGGGGTTGTTTAAAACAGCAACAGAGCACAAAGAACAGATACGGTACTTTAGTCAACAGGATCTTCGGGAGCTTTTTAGCCTTCCAGAAGAGGGATTTGATACATCTGTCACACAACAGCAAATGCATGAGGAACATGATCAACAACTTGCAATGGACGAATCTTTGAGAAGCCACATAAAGTTTCTGGAGACTCAAGGTATTGCAGGAGTTAGTCACCACAATTTGCTATTTTCGAAGACTGCTCCAGAGCCGGTGTATGCATTGGAGGAAGAAGACACATCGTTCAGGAGGAATAGAGAGTTTGGATTCAGAGACAGACCAACATCAAGTTCTTCATCCGATCATGATATAAACGGAGCAAGGTATGCTTTCAACCCAAAGGATGTGAAGTTGAACAGATCTACCACAAATTCAAGCAGTCCAGGCAAACCTACAGTAAATGAACTCAAATATAGAATCAATCGGCTGTCTCAAACTCTAGAAAATAAGGTTCTTATCTCAAGATTACCAGACAGGGGGGAAAGAATTCATAAGCAAATTGATGAATTGAATTTACAACTTTCTGAATTAAGAAGAAAAGAACATGAAAGTGAAGTCATCGAGATTGCTGACGAGTTCCAGGAGATATTGAATGTATAG 3282 41.32 MEGGSIFNSGMADSTTSRKKPLSLNDRHYRLLQDLSAPPKPSLATAADHREGDEDVKPSRIGLENQHLFSEVSSNVDEFNDDKVPQSSGVNVEEKPTKVKINGRRRLCKLSSRENDCLDNPEGFYFNAPNFSGITDFDSPSPPPPLPVENRVNKGSEIRDILNDLSARLELLSVEKRREKPKKVDSIEDFSASSGGKGNEEANKADDREVESLKFSTKPSNSLLGESVKVEKAVKTLNVGGSGEYGEEILPNKVKVDVFDEGIHKVDTCGKDSEQLLNLEHGNKHDKGRDKCRSQDVQKTYNSLGKSPVLIDEGEVEDEDDCVVLNHETRDFNEVRRQDGKYEEKDDGSDGLDKSCEDFILEGKSSAGRNSTFKLQGRIATMLYPHQRDGLQWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFYSRLIKRVLVVAPKTLLPHWIKELSVVGLSEKTREYYGTSAKLRQYELNYILQDKGVLLTTYDIVRNNSKSLQGNCFSEDEETEDGTTWDYMILDEGHLIKNPSTQRAKSLLDIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDKHWFKEHYESAILRGNDKKASERDKRIGSVVAKGLRERIQPYFLRRMKSEVFNEDNDQAATKLSKKNDIIVWLRLTSCQRQLYEAFLKSDLALSAFDGSVLAALTILKKICDHPLLLTKRAAEEVLEGMETVLSPEDAGVAEKLAKRLADVVDRDFYEVYDDNVSCKISFIMSLLDNLVPKGHSILIFSQTRKMLSLLEKSLLSNDYEFLRIDGTTKAMDRVKIVNDFQEGRGASIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPEEGFDTSVTQQQMHEEHDQQLAMDESLRSHIKFLETQGIAGVSHHNLLFSKTAPEPVYALEEEDTSFRRNREFGFRDRPTSSSSSDHDINGARYAFNPKDVKLNRSTTNSSSPGKPTVNELKYRINRLSQTLENKVLISRLPDRGERIHKQIDELNLQLSELRRKEHESEVIEIADEFQEILNV* 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23913724 23925625 + CsaV3_6G041230.1 Csa06g02737 534364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02737 1093 MobiDBLite consensus disorder prediction 46 61 - -
Csa06g02737 1093 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 395 570 IPR014001 -
Csa06g02737 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 927 IPR027417 -
Csa06g02737 1093 PANTHER OS04G0692700 PROTEIN 343 965 - -
Csa06g02737 1093 MobiDBLite consensus disorder prediction 66 93 - -
Csa06g02737 1093 CDD SF2_C_SNF 738 864 - -
Csa06g02737 1093 Gene3D - 642 941 IPR027417 -
Csa06g02737 1093 Coils Coil 1054 1074 - -
Csa06g02737 1093 SMART helicmild6 770 853 IPR001650 -
Csa06g02737 1093 MobiDBLite consensus disorder prediction 178 216 - -
Csa06g02737 1093 MobiDBLite consensus disorder prediction 200 214 - -
Csa06g02737 1093 MobiDBLite consensus disorder prediction 1 95 - -
Csa06g02737 1093 Pfam SNF2-related domain 398 690 IPR000330 GO:0005524|GO:0140658
Csa06g02737 1093 SMART ultradead3 379 581 IPR014001 -
Csa06g02737 1093 Pfam Helicase conserved C-terminal domain 741 853 IPR001650 -
Csa06g02737 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 620 IPR027417 -
Csa06g02737 1093 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 744 903 IPR001650 -
Csa06g02737 1093 PANTHER SNF2/RAD54 FAMILY MEMBER 343 965 - -
Csa06g02737 1093 MobiDBLite consensus disorder prediction 979 1004 - -
Csa06g02737 1093 Gene3D - 362 641 IPR038718 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02737 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - csv:101213923 2146.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02211 Csa-Chr3:19247512 Csa06g02737 Csa-Chr6:23913724 1.10E-96 dispersed
Csa06g01084 Csa-Chr6:8939102 Csa06g02737 Csa-Chr6:23913724 2.91E-63 dispersed
Csa06g02737 Csa-Chr6:23913724 Csa06g02443 Csa-Chr6:21798979 4.45E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32100 PF00176 SNF2_N 2.90E-46 CL0023 Csa TR