Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02776 ATGAGGTCTAGCAGGGATCTGGGCTCTTCTGGTACTGCCTCTTCTGGGTTTTCTGGTTTTGACTCTGATAGTGGGCATAAGAGTCTTCCTCTTCCTCGACCTGCTACTTCTGGCCTTGGGATTGACCATGGAGCTGGGAATGGATCTGGGTCCAGTTCGGTTTCTAGTGATATCTCTTCTGGCTCTTCAGATGATCAACCATCTGCTCAAGAACAGCTTCAATTTGGAGCTTACAGAGGATTTGCCGATAACAGAATCGAGACAAGAGCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACTAGTCCTACATCGCCTCTGAACCCACGTTTCTGTGGCATGAGTCTTGAGTCTCCTCCAACTCATAAGCTGCCGCTTCCTCCAAGTGCTCCCACCAGCCCTTCTTCCTTGACCAGCATGAGAGCTATCAATATCGGCGATAACAACGCAGCTGTACAATCGAAATGGAAGAAAGGAAGGCTTCTAGGGAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTTAGGGTTATAAGTGATGATTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTGTGCTCAGTCAGCTGTCGCATCCGAACATTGTCCGGTACTATGGTAGTGAAATGGGTGAAGAGTCACTCTCAGTCTACTTAGAATACATTTCCGGCGGTTCAATTCACAAACTACTTCAAGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGGAAGATTCTTTCTGGGCTTGCTTATTTGCATGGGAGAAATACAGTGCATAGGGACATCAAAGGGGCAAATATCTTAGTAGATCCGAAAGGGGAGGTCAAGTTGGTGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTCAAAGGGAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCAGTAGACATTTGGAGTTTAGGATGTACTGTTCTTGAAATGGCAACGTCTAAACCGCCTTGGAACAGATACGAAGGGGTGGCTGCCATTTTCAAAATTGGGAATAGTAAAGACATTCCCGAAATTCCAGACTCTCTCTCCAGTGATGCTAGAAGTTTCGTGCAATTATGTTTGCAACGGGATCCATCTGCCCGTCCTTCTGCTGCTGAACTACTGGACCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTATCTGTGGATGCATTCCCCTTTAGCTTCGATGGAATCCAGACTTCGCCATTGTTAGATCGTCATCCAAACAGAAAAAGTATAAGCATATGTGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGTCCTAGGGGAAATGGAAGATTGATCACATCCTTGCCTGTCTCTCCATGTTCGAGTCCATTACGGTCATATGGCCCCACACATCAGAGCTGTTATCTTTCACCACCTCACACGTCTTACATGGGGGTGGGTCAAAGTGGATACAATTTGAATGAATATGCATATAACACCAGACCAAACACATTGTTCACCCTTGATCCTTCGCGAGAGTCATCCCTCTTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGACCTCTTTGA 1674 45.34 MRSSRDLGSSGTASSGFSGFDSDSGHKSLPLPRPATSGLGIDHGAGNGSGSSSVSSDISSGSSDDQPSAQEQLQFGAYRGFADNRIETRARSPGPGSKGPTSPTSPLNPRFCGMSLESPPTHKLPLPPSAPTSPSSLTSMRAINIGDNNAAVQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITVLSQLSHPNIVRYYGSEMGEESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLVDFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWNRYEGVAAIFKIGNSKDIPEIPDSLSSDARSFVQLCLQRDPSARPSAAELLDHPFVQDAVTPRASDVNLSVDAFPFSFDGIQTSPLLDRHPNRKSISICDGDYVTNPTFSSRAPSPRGNGRLITSLPVSPCSSPLRSYGPTHQSCYLSPPHTSYMGVGQSGYNLNEYAYNTRPNTLFTLDPSRESSLLKVQTHLGSPRRPL* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24207515 24211470 - CsaV3_6G041620.1 Csa06g02776 534403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02776 557 CDD STKc_MEKK1_plant 155 412 - -
Csa06g02776 557 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 5 534 - -
Csa06g02776 557 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g02776 557 MobiDBLite consensus disorder prediction 87 136 - -
Csa06g02776 557 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Csa06g02776 557 MobiDBLite consensus disorder prediction 1 73 - -
Csa06g02776 557 MobiDBLite consensus disorder prediction 46 73 - -
Csa06g02776 557 Pfam Protein kinase domain 157 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02776 557 MobiDBLite consensus disorder prediction 95 111 - -
Csa06g02776 557 Gene3D Transferase(Phosphotransferase) domain 1 152 429 - -
Csa06g02776 557 SMART serkin_6 156 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02776 557 ProSiteProfiles Protein kinase domain profile. 156 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02776 557 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 5 534 - -
Csa06g02776 557 SUPERFAMILY Protein kinase-like (PK-like) 154 497 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03971 Csa-Chr3:34710986 Csa06g02776 Csa-Chr6:24207515 3.47E-38 dispersed
Csa05g00475 Csa-Chr5:3086912 Csa06g02776 Csa-Chr6:24207515 1.56E-138 dispersed
Csa05g01522 Csa-Chr5:17767126 Csa06g02776 Csa-Chr6:24207515 5.65E-77 dispersed
Csa06g02446 Csa-Chr6:21834105 Csa06g02776 Csa-Chr6:24207515 2.47E-90 dispersed
Csa06g02776 Csa-Chr6:24207515 Csa06g02922 Csa-Chr6:25325579 7.66E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78404 PF00069 Pkinase 1.50E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02776 K04421 - csv:101203907 1051.97